Wall clock time and date at job start Mon Mar 30 2020 07:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38589 * 119.99756 * 2 1 4 4 C 1.39461 * 120.48610 * 359.97438 * 3 2 1 5 5 C 1.39442 * 118.19468 * 179.97438 * 4 3 2 6 6 C 1.48032 * 120.52564 * 180.02562 * 5 4 3 7 7 C 1.39897 * 119.88133 * 359.70825 * 6 5 4 8 8 C 1.36290 * 120.12225 * 179.76152 * 7 6 5 9 9 C 1.40909 * 119.87804 * 0.48997 * 8 7 6 10 10 C 1.41057 * 120.12073 * 179.74200 * 9 8 7 11 11 H 1.07999 * 119.99976 * 204.65825 * 10 9 8 12 12 C 1.40091 * 120.00160 * 24.66274 * 10 9 8 13 13 N 1.30740 * 120.00228 * 17.91396 * 12 10 9 14 14 Si 1.86798 * 120.00102 * 197.91885 * 12 10 9 15 15 H 1.48504 * 109.47239 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47626 * 119.99777 * 14 12 10 17 17 H 1.48503 * 109.46903 * 239.99657 * 14 12 10 18 18 C 1.40908 * 119.75852 * 359.76416 * 9 8 7 19 19 C 1.36297 * 119.87602 * 0.02562 * 18 9 8 20 20 N 1.33519 * 118.94487 * 0.02663 * 5 4 3 21 21 C 1.31568 * 120.86797 * 359.97438 * 20 5 4 22 22 N 1.31845 * 122.00548 * 359.97438 * 21 20 5 23 23 H 1.08998 * 109.47291 * 60.00525 * 1 2 3 24 24 H 1.09000 * 109.46582 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47653 * 300.00116 * 1 2 3 26 26 H 0.96997 * 120.00028 * 179.97438 * 2 1 3 27 27 H 1.08007 * 120.90470 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.93935 * 359.97438 * 7 6 5 29 29 H 1.08005 * 120.06138 * 180.23327 * 8 7 6 30 30 H 0.96996 * 120.00225 * 180.02562 * 13 12 10 31 31 H 1.07999 * 120.05942 * 179.97438 * 18 9 8 32 32 H 1.07998 * 119.94068 * 180.02562 * 19 18 9 33 33 H 1.08001 * 118.99642 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1579 1.2002 0.0000 4 6 1.4708 2.4139 -0.0005 5 6 2.2157 3.5926 0.0000 6 6 1.5394 4.9094 0.0001 7 6 0.1420 4.9752 -0.0066 8 6 -0.4858 6.1849 -0.0017 9 6 0.2753 7.3708 -0.0003 10 6 -0.3691 8.6255 -0.0007 11 1 0.1408 9.4944 -0.3900 12 6 -1.6705 8.7448 0.5038 13 7 -2.1585 7.8130 1.2804 14 14 -2.7088 10.2349 0.0670 15 1 -1.9311 11.1374 -0.8195 16 1 -3.9403 9.7919 -0.6345 17 1 -3.0801 10.9605 1.3084 18 6 1.6826 7.2986 0.0011 19 6 2.3001 6.0836 0.0005 20 7 3.5486 3.5148 0.0005 21 6 4.1566 2.3480 0.0010 22 7 3.4881 1.2116 0.0015 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.9500 -0.8400 0.0004 27 1 0.3911 2.4400 -0.0005 28 1 -0.4404 4.0658 -0.0123 29 1 -1.5647 6.2346 -0.0031 30 1 -3.0598 7.8954 1.6294 31 1 2.2707 8.2044 0.0017 32 1 3.3786 6.0270 0.0019 33 1 5.2363 2.3202 0.0018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061897152.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:24 Heat of formation + Delta-G solvation = 47.595703 kcal Electronic energy + Delta-G solvation = -17428.479095 eV Core-core repulsion = 14645.834037 eV Total energy + Delta-G solvation = -2782.645058 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.107 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.65898 -39.40790 -37.27381 -35.90131 -34.10039 -32.39602 -31.27223 -30.89669 -27.63741 -27.39788 -24.84304 -23.93875 -22.44118 -21.98387 -19.35984 -19.02749 -18.26561 -17.13294 -16.43948 -16.03339 -15.98105 -15.97512 -15.43695 -15.06492 -14.84296 -14.59146 -14.32004 -13.90461 -13.60609 -13.14841 -13.01758 -12.81990 -12.69877 -12.27591 -12.00032 -11.70528 -11.60811 -11.23317 -11.15024 -10.77422 -10.02692 -9.51791 -9.22180 -9.02281 -8.76024 -6.40898 -0.10195 0.45942 1.12282 1.21382 1.40371 1.55331 1.58661 2.16232 2.17733 2.62742 3.18127 3.42204 3.58282 3.75379 3.99418 4.26702 4.38323 4.46860 4.53401 4.60926 4.73508 4.79127 4.90339 5.01283 5.07095 5.25232 5.35979 5.41889 5.64772 5.84684 5.93404 6.03371 6.13596 6.26614 6.39017 6.57669 6.76077 6.80223 6.92873 7.49374 8.18505 Molecular weight = 255.11amu Principal moments of inertia in cm(-1) A = 0.033898 B = 0.004732 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.819166 B = 5916.045836 C = 6658.232170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.712 5.712 3 C 0.429 3.571 4 C -0.318 4.318 5 C 0.264 3.736 6 C -0.220 4.220 7 C -0.061 4.061 8 C -0.197 4.197 9 C 0.097 3.903 10 C -0.474 4.474 11 H 0.085 0.915 12 C 0.037 3.963 13 N -0.803 5.803 14 Si 0.987 3.013 15 H -0.256 1.256 16 H -0.261 1.261 17 H -0.264 1.264 18 C -0.254 4.254 19 C -0.035 4.035 20 N -0.595 5.595 21 C 0.332 3.668 22 N -0.613 5.613 23 H 0.056 0.944 24 H 0.114 0.886 25 H 0.054 0.946 26 H 0.414 0.586 27 H 0.144 0.856 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.296 0.704 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.116 -10.234 -1.737 10.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.345 5.345 3 C 0.185 3.815 4 C -0.345 4.345 5 C 0.128 3.872 6 C -0.223 4.223 7 C -0.080 4.080 8 C -0.216 4.216 9 C 0.094 3.906 10 C -0.502 4.502 11 H 0.103 0.897 12 C -0.181 4.181 13 N -0.427 5.427 14 Si 0.807 3.193 15 H -0.180 1.180 16 H -0.185 1.185 17 H -0.188 1.188 18 C -0.274 4.274 19 C -0.054 4.054 20 N -0.316 5.316 21 C 0.042 3.958 22 N -0.340 5.340 23 H 0.074 0.926 24 H 0.133 0.867 25 H 0.073 0.927 26 H 0.251 0.749 27 H 0.161 0.839 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.623 -10.337 -1.579 10.475 hybrid contribution -1.072 0.378 0.049 1.138 sum -0.449 -9.959 -1.530 10.086 Atomic orbital electron populations 1.21854 0.77051 1.04988 1.01654 1.44273 1.06980 1.04200 1.79026 1.18645 0.88593 0.87291 0.86938 1.22060 1.02215 0.91866 1.18380 1.20035 0.88832 0.92850 0.85524 1.18022 0.92631 0.90167 1.21434 1.20672 0.92940 0.97229 0.97185 1.20967 0.99483 0.91855 1.09297 1.18136 0.91916 0.94102 0.86434 1.20093 0.99456 0.95646 1.34964 0.89696 1.26918 0.98551 1.01047 0.91624 1.69823 1.17462 1.34520 1.20902 0.85073 0.77784 0.77054 0.79378 1.17970 1.18509 1.18831 1.20915 0.94426 0.96717 1.15294 1.20628 0.98697 0.91721 0.94353 1.68431 1.10336 1.30191 1.22610 1.25126 1.01583 0.81429 0.87621 1.67934 1.06894 1.32752 1.26439 0.92567 0.86719 0.92733 0.74940 0.83880 0.86701 0.87107 0.89326 0.87830 0.86816 0.76260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.48 9.95 127.77 1.27 2.75 16 2 N -0.71 -16.14 5.87 -366.14 -2.15 -18.29 16 3 C 0.43 13.63 7.71 133.10 1.03 14.66 16 4 C -0.32 -11.47 8.76 22.85 0.20 -11.27 16 5 C 0.26 11.08 6.75 41.78 0.28 11.36 16 6 C -0.22 -10.25 5.90 -19.88 -0.12 -10.37 16 7 C -0.06 -2.83 9.37 22.22 0.21 -2.62 16 8 C -0.20 -10.07 8.63 22.47 0.19 -9.88 16 9 C 0.10 5.17 5.57 -21.28 -0.12 5.05 16 10 C -0.47 -24.39 9.04 23.41 0.21 -24.18 16 11 H 0.08 4.19 7.91 -2.91 -0.02 4.17 16 12 C 0.04 1.74 5.13 85.31 0.44 2.18 16 13 N -0.80 -39.36 10.96 21.85 0.24 -39.12 16 14 Si 0.99 35.38 29.60 68.60 2.03 37.41 16 15 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 16 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 17 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 18 C -0.25 -12.71 9.73 22.47 0.22 -12.49 16 19 C -0.03 -1.66 9.52 22.22 0.21 -1.45 16 20 N -0.59 -23.57 9.57 -189.37 -1.81 -25.38 16 21 C 0.33 10.91 12.27 180.94 2.22 13.13 16 22 N -0.61 -19.96 10.46 -197.78 -2.07 -22.02 16 23 H 0.06 1.00 7.97 -2.39 -0.02 0.98 16 24 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.05 0.99 7.97 -2.39 -0.02 0.97 16 26 H 0.41 7.70 8.95 -92.71 -0.83 6.87 16 27 H 0.14 4.76 5.10 -2.91 -0.01 4.74 16 28 H 0.12 4.64 6.24 -2.91 -0.02 4.62 16 29 H 0.11 5.77 6.16 -2.91 -0.02 5.75 16 30 H 0.30 12.83 8.29 -92.71 -0.77 12.06 16 31 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 32 H 0.11 5.09 7.55 -2.91 -0.02 5.07 16 33 H 0.22 5.26 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -61.90 286.51 2.81 -59.09 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.32 Total: 31.44 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 6.25 Total: -23.13 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -5.79 Total: -104.82 kcal Atomic # 14 Polarization: 35.38 SS G_CDS: 2.03 Total: 37.41 kcal Total: -61.90 2.81 -59.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061897152.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.686 kcal (2) G-P(sol) polarization free energy of solvation -61.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds