Wall clock time and date at job start Mon Mar 30 2020 07:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47559 * 2 1 4 4 C 1.53004 * 109.47095 * 119.99899 * 2 1 3 5 5 C 1.52992 * 109.47348 * 174.99865 * 4 2 1 6 6 O 1.42902 * 109.47037 * 179.97438 * 5 4 2 7 7 C 1.42902 * 113.99902 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.12193 * 309.16651 * 7 6 5 9 9 C 1.50185 * 109.13092 * 190.00316 * 7 6 5 10 10 C 1.33244 * 121.99877 * 219.49377 * 9 7 6 11 11 C 1.46990 * 119.15475 * 359.94143 * 10 9 7 12 12 O 1.21327 * 121.41814 * 169.14987 * 11 10 9 13 13 C 1.51596 * 117.12148 * 349.38947 * 11 10 9 14 14 H 1.08996 * 109.92674 * 159.35954 * 13 11 10 15 15 C 1.50704 * 109.92634 * 280.56114 * 13 11 10 16 16 H 1.07997 * 120.00192 * 357.66168 * 15 13 11 17 17 C 1.37883 * 119.99872 * 177.66757 * 15 13 11 18 18 N 1.31509 * 120.00059 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99723 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47205 * 89.99685 * 19 17 15 21 21 H 1.48501 * 109.47195 * 209.99868 * 19 17 15 22 22 H 1.48499 * 109.47481 * 330.00071 * 19 17 15 23 23 O 1.42652 * 109.08402 * 68.31006 * 7 6 5 24 24 H 1.08992 * 109.47224 * 300.00064 * 1 2 3 25 25 H 1.09009 * 109.46827 * 60.00237 * 1 2 3 26 26 H 1.09001 * 109.46995 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47365 * 239.99846 * 2 1 3 28 28 H 1.09002 * 109.46908 * 59.99566 * 3 2 1 29 29 H 1.08995 * 109.47585 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47205 * 300.00164 * 3 2 1 31 31 H 1.09005 * 109.46908 * 54.99802 * 4 2 1 32 32 H 1.09000 * 109.47061 * 295.00208 * 4 2 1 33 33 H 1.09005 * 109.47168 * 60.00096 * 5 4 2 34 34 H 1.08997 * 109.47707 * 299.99858 * 5 4 2 35 35 H 1.08002 * 118.99648 * 39.20383 * 9 7 6 36 36 H 1.08007 * 120.42290 * 180.17355 * 10 9 7 37 37 H 0.96998 * 119.99949 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.8311 1.1881 6 8 4.0410 -1.5042 2.3552 7 6 5.4609 -1.6595 2.3978 8 1 5.8009 -2.0950 1.4581 9 6 5.8215 -2.5821 3.5266 10 6 6.8837 -2.3676 4.3020 11 6 7.7313 -1.1941 4.0468 12 8 8.5872 -0.8489 4.8344 13 6 7.4859 -0.4310 2.7601 14 1 7.8870 0.5789 2.8450 15 6 8.1367 -1.1483 1.6055 16 1 8.7091 -2.0470 1.7815 17 6 8.0013 -0.6570 0.3243 18 7 7.3040 0.4372 0.1098 19 14 8.8085 -1.5457 -1.1068 20 1 7.8666 -2.5519 -1.6594 21 1 9.1605 -0.5640 -2.1640 22 1 10.0403 -2.2277 -0.6348 23 8 6.0654 -0.3782 2.5650 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6053 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1370 33 1 3.9994 0.1675 1.1421 34 1 3.8532 -1.3941 0.3004 35 1 5.1983 -3.4430 3.7186 36 1 7.1211 -3.0494 5.1053 37 1 7.2085 0.7825 -0.7915 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071294529.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:44 Heat of formation + Delta-G solvation = -128.350362 kcal Electronic energy + Delta-G solvation = -19431.788435 eV Core-core repulsion = 16367.338023 eV Total energy + Delta-G solvation = -3064.450412 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.20795 -37.76367 -36.55217 -35.22318 -32.88900 -32.14204 -29.42531 -28.06948 -27.04729 -25.47096 -23.32565 -22.40266 -21.67873 -19.81592 -17.74752 -16.97387 -16.56972 -15.88474 -15.66344 -15.16303 -14.87822 -14.18282 -13.81199 -13.64297 -13.42273 -13.16189 -12.81994 -12.56044 -12.50867 -12.17328 -11.84540 -11.76274 -11.43234 -11.27549 -11.07531 -10.97248 -10.68280 -10.53296 -10.47277 -10.36024 -9.91962 -9.42924 -9.15745 -8.88862 -8.56999 -7.95269 -6.30161 -4.50908 1.66773 3.12400 3.21196 3.24495 3.46397 4.12497 4.21093 4.86691 4.98247 5.02785 5.05514 5.10887 5.28850 5.47780 5.55767 5.64704 5.67289 5.78299 5.85655 5.91480 5.95973 6.06168 6.12846 6.24817 6.29642 6.34923 6.41185 6.53881 6.62493 6.65769 6.77471 7.17560 7.50339 7.67248 7.79378 8.29075 8.43565 8.64233 9.22748 10.73402 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.017123 B = 0.007460 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.858584 B = 3752.562636 C = 4797.930904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.153 4.153 4 C -0.112 4.112 5 C 0.067 3.933 6 O -0.381 6.381 7 C 0.286 3.714 8 H 0.079 0.921 9 C -0.085 4.085 10 C -0.216 4.216 11 C 0.366 3.634 12 O -0.478 6.478 13 C 0.192 3.808 14 H 0.095 0.905 15 C -0.567 4.567 16 H 0.065 0.935 17 C 0.084 3.916 18 N -0.849 5.849 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.269 1.269 23 O -0.381 6.381 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.746 -3.003 -1.428 11.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.210 4.210 4 C -0.149 4.149 5 C -0.009 4.009 6 O -0.301 6.301 7 C 0.190 3.810 8 H 0.096 0.904 9 C -0.104 4.104 10 C -0.235 4.235 11 C 0.246 3.754 12 O -0.356 6.356 13 C 0.136 3.864 14 H 0.113 0.887 15 C -0.605 4.605 16 H 0.083 0.917 17 C -0.124 4.124 18 N -0.483 5.483 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.206 1.206 22 H -0.194 1.194 23 O -0.302 6.302 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.605 -2.563 -1.013 10.957 hybrid contribution 0.669 -0.788 -0.997 1.436 sum -9.936 -3.351 -2.010 10.676 Atomic orbital electron populations 1.21821 0.95328 1.01451 1.01564 1.21030 0.95384 0.96753 0.98088 1.21929 1.02365 0.95438 1.01262 1.21580 0.94515 1.00687 0.98135 1.22475 0.93477 0.98055 0.86940 1.87808 1.20316 1.77894 1.44089 1.21143 0.78889 0.85682 0.95253 0.90449 1.24015 0.95679 0.98343 0.92408 1.23462 0.98865 1.00380 1.00828 1.24406 0.79586 0.83666 0.87767 1.90409 1.30341 1.67419 1.47415 1.20577 0.78680 0.98132 0.89052 0.88739 1.21146 1.35844 1.12440 0.91030 0.91665 1.25010 0.93994 0.94500 0.98885 1.70051 1.36658 1.19698 1.21883 0.86532 0.80145 0.79614 0.81547 1.20168 1.20629 1.19376 1.87998 1.22917 1.26758 1.92567 0.92725 0.92855 0.92878 0.91200 0.92753 0.91425 0.93108 0.91800 0.91378 0.91114 0.93885 0.85956 0.85567 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.19 37.16 0.34 -1.11 16 2 C -0.09 -1.15 2.92 -90.62 -0.26 -1.41 16 3 C -0.15 -1.95 8.95 37.16 0.33 -1.61 16 4 C -0.11 -1.57 5.05 -26.73 -0.14 -1.70 16 5 C 0.07 1.19 5.55 37.15 0.21 1.40 16 6 O -0.38 -7.55 10.21 -59.11 -0.60 -8.16 16 7 C 0.29 6.16 2.90 35.76 0.10 6.26 16 8 H 0.08 1.78 7.25 -51.93 -0.38 1.40 16 9 C -0.09 -1.60 9.77 -36.30 -0.35 -1.96 16 10 C -0.22 -4.27 10.18 -37.78 -0.38 -4.65 16 11 C 0.37 8.66 6.38 -30.32 -0.19 8.46 16 12 O -0.48 -12.09 17.94 5.52 0.10 -11.99 16 13 C 0.19 4.89 3.22 -28.59 -0.09 4.79 16 14 H 0.10 2.59 8.14 -51.93 -0.42 2.16 16 15 C -0.57 -14.82 7.31 -34.44 -0.25 -15.07 16 16 H 0.07 1.70 7.75 -52.49 -0.41 1.29 16 17 C 0.08 2.18 5.38 -17.82 -0.10 2.08 16 18 N -0.85 -22.62 12.86 55.43 0.71 -21.91 16 19 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 O -0.38 -9.47 9.45 -59.11 -0.56 -10.03 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.01 6.56 -51.93 -0.34 0.67 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.42 6.24 -51.93 -0.32 1.10 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.13 2.12 8.06 -52.48 -0.42 1.69 16 37 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 311.77 15.07 4.70 4.70 Total: -1.00 -28.41 311.77 -7.12 -35.53 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.66 Total: 1.57 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -0.79 Total: -4.52 kcal Atomic # 7 Polarization: -22.62 SS G_CDS: 0.71 Total: -21.91 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -1.06 Total: -30.17 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.41 -7.12 -35.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071294529.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.824 kcal (2) G-P(sol) polarization free energy of solvation -28.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds