Wall clock time and date at job start Mon Mar 30 2020 07:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47559 * 2 1 4 4 C 1.53004 * 109.47095 * 119.99899 * 2 1 3 5 5 C 1.52992 * 109.47348 * 174.99865 * 4 2 1 6 6 O 1.42902 * 109.47037 * 179.97438 * 5 4 2 7 7 C 1.42902 * 113.99902 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.12193 * 309.16651 * 7 6 5 9 9 C 1.50185 * 109.13092 * 190.00316 * 7 6 5 10 10 C 1.33244 * 121.99877 * 219.49377 * 9 7 6 11 11 C 1.46990 * 119.15475 * 359.94143 * 10 9 7 12 12 O 1.21327 * 121.41814 * 169.14987 * 11 10 9 13 13 C 1.51596 * 117.12148 * 349.38947 * 11 10 9 14 14 H 1.08996 * 109.92674 * 159.35954 * 13 11 10 15 15 C 1.50704 * 109.92634 * 280.56114 * 13 11 10 16 16 H 1.07997 * 120.00192 * 357.66168 * 15 13 11 17 17 C 1.37883 * 119.99872 * 177.66757 * 15 13 11 18 18 N 1.31509 * 120.00059 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99723 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47205 * 89.99685 * 19 17 15 21 21 H 1.48501 * 109.47195 * 209.99868 * 19 17 15 22 22 H 1.48499 * 109.47481 * 330.00071 * 19 17 15 23 23 O 1.42652 * 109.08402 * 68.31006 * 7 6 5 24 24 H 1.08992 * 109.47224 * 300.00064 * 1 2 3 25 25 H 1.09009 * 109.46827 * 60.00237 * 1 2 3 26 26 H 1.09001 * 109.46995 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47365 * 239.99846 * 2 1 3 28 28 H 1.09002 * 109.46908 * 59.99566 * 3 2 1 29 29 H 1.08995 * 109.47585 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47205 * 300.00164 * 3 2 1 31 31 H 1.09005 * 109.46908 * 54.99802 * 4 2 1 32 32 H 1.09000 * 109.47061 * 295.00208 * 4 2 1 33 33 H 1.09005 * 109.47168 * 60.00096 * 5 4 2 34 34 H 1.08997 * 109.47707 * 299.99858 * 5 4 2 35 35 H 1.08002 * 118.99648 * 39.20383 * 9 7 6 36 36 H 1.08007 * 120.42290 * 180.17355 * 10 9 7 37 37 H 0.96998 * 119.99949 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.8311 1.1881 6 8 4.0410 -1.5042 2.3552 7 6 5.4609 -1.6595 2.3978 8 1 5.8009 -2.0950 1.4581 9 6 5.8215 -2.5821 3.5266 10 6 6.8837 -2.3676 4.3020 11 6 7.7313 -1.1941 4.0468 12 8 8.5872 -0.8489 4.8344 13 6 7.4859 -0.4310 2.7601 14 1 7.8870 0.5789 2.8450 15 6 8.1367 -1.1483 1.6055 16 1 8.7091 -2.0470 1.7815 17 6 8.0013 -0.6570 0.3243 18 7 7.3040 0.4372 0.1098 19 14 8.8085 -1.5457 -1.1068 20 1 7.8666 -2.5519 -1.6594 21 1 9.1605 -0.5640 -2.1640 22 1 10.0403 -2.2277 -0.6348 23 8 6.0654 -0.3782 2.5650 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6053 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1370 33 1 3.9994 0.1675 1.1421 34 1 3.8532 -1.3941 0.3004 35 1 5.1983 -3.4430 3.7186 36 1 7.1211 -3.0494 5.1053 37 1 7.2085 0.7825 -0.7915 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071294529.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:44 Heat of formation + Delta-G solvation = -144.814259 kcal Electronic energy + Delta-G solvation = -19432.502363 eV Core-core repulsion = 16367.338023 eV Total energy + Delta-G solvation = -3065.164340 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.02288 -39.41854 -38.03334 -36.68914 -34.76680 -33.91237 -30.85608 -29.84431 -28.00712 -27.24856 -25.10391 -23.80594 -23.42851 -20.88235 -19.61049 -18.75591 -18.28439 -17.66494 -17.37169 -16.78286 -16.35599 -15.69443 -15.41298 -15.03855 -14.88227 -14.77104 -14.39050 -14.22644 -14.08793 -13.57394 -13.35564 -12.99081 -12.94006 -12.82175 -12.66315 -12.44496 -12.32199 -11.83092 -11.64471 -11.62460 -11.49473 -11.14090 -10.86003 -10.80540 -10.32674 -9.80336 -8.29167 -6.58475 -0.00371 1.36258 1.39778 1.49837 1.70810 2.32248 2.59306 2.93677 3.25860 3.47007 3.81736 3.94981 4.02876 4.04480 4.18104 4.31568 4.41942 4.54238 4.67557 4.70444 4.79722 4.83569 4.99780 5.00267 5.02809 5.10639 5.15369 5.21398 5.24186 5.33517 5.46999 5.49586 5.50722 5.68284 6.14979 6.39034 6.51951 6.68405 7.19358 8.74961 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.017123 B = 0.007460 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.858584 B = 3752.562636 C = 4797.930904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.102 4.102 5 C 0.066 3.934 6 O -0.377 6.377 7 C 0.278 3.722 8 H 0.062 0.938 9 C -0.068 4.068 10 C -0.220 4.220 11 C 0.361 3.639 12 O -0.504 6.504 13 C 0.186 3.814 14 H 0.057 0.943 15 C -0.581 4.581 16 H 0.063 0.937 17 C 0.043 3.957 18 N -0.878 5.878 19 Si 0.959 3.041 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.267 1.267 23 O -0.402 6.402 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.173 0.827 36 H 0.166 0.834 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.325 -5.016 -1.843 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.139 4.139 5 C -0.010 4.010 6 O -0.297 6.297 7 C 0.183 3.817 8 H 0.079 0.921 9 C -0.086 4.086 10 C -0.239 4.239 11 C 0.243 3.757 12 O -0.384 6.384 13 C 0.130 3.870 14 H 0.075 0.925 15 C -0.618 4.618 16 H 0.082 0.918 17 C -0.163 4.163 18 N -0.512 5.512 19 Si 0.783 3.217 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.192 1.192 23 O -0.324 6.324 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.190 0.810 36 H 0.184 0.816 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.201 -4.581 -1.428 13.111 hybrid contribution 1.110 -0.081 -0.902 1.433 sum -11.091 -4.662 -2.330 12.255 Atomic orbital electron populations 1.21773 0.92989 1.02458 1.02382 1.21044 0.97214 0.95774 0.97050 1.21913 1.00331 0.96464 1.02199 1.21569 0.91310 1.01929 0.99113 1.22587 0.96033 0.96079 0.86313 1.87815 1.19115 1.77862 1.44937 1.21281 0.79532 0.84843 0.96054 0.92135 1.24235 0.95599 0.98570 0.90214 1.23456 0.98327 0.99415 1.02695 1.24486 0.79823 0.84844 0.86510 1.90388 1.31707 1.68464 1.47795 1.20381 0.79180 0.96729 0.90724 0.92517 1.21280 1.36241 1.12557 0.91695 0.91831 1.25779 0.94252 0.95073 1.01218 1.70162 1.37553 1.20932 1.22595 0.85540 0.79284 0.78655 0.78256 1.18874 1.20221 1.19167 1.87926 1.22432 1.29199 1.92855 0.92339 0.91670 0.91785 0.91254 0.92499 0.94524 0.91523 0.90124 0.91461 0.94210 0.94149 0.81005 0.81634 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.19 71.98 0.66 -1.75 16 2 C -0.09 -2.12 2.92 -10.80 -0.03 -2.16 16 3 C -0.15 -3.84 8.95 71.98 0.64 -3.19 16 4 C -0.10 -2.72 5.05 30.59 0.15 -2.57 16 5 C 0.07 2.37 5.55 71.98 0.40 2.77 16 6 O -0.38 -14.68 10.21 -126.15 -1.29 -15.97 16 7 C 0.28 11.90 2.90 71.07 0.21 12.11 16 8 H 0.06 2.81 7.25 -2.39 -0.02 2.79 16 9 C -0.07 -2.36 9.77 24.40 0.24 -2.13 16 10 C -0.22 -8.21 10.18 23.44 0.24 -7.98 16 11 C 0.36 17.26 6.38 28.27 0.18 17.44 16 12 O -0.50 -25.87 17.94 -3.18 -0.06 -25.93 16 13 C 0.19 9.88 3.22 29.39 0.09 9.97 16 14 H 0.06 3.34 8.14 -2.39 -0.02 3.33 16 15 C -0.58 -31.00 7.31 25.60 0.19 -30.81 16 16 H 0.06 3.34 7.75 -2.91 -0.02 3.32 16 17 C 0.04 2.23 5.38 84.66 0.46 2.69 16 18 N -0.88 -48.26 12.86 21.45 0.28 -47.99 16 19 Si 0.96 40.67 29.54 68.60 2.03 42.69 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 23 O -0.40 -20.64 9.45 -126.15 -1.19 -21.83 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.14 6.56 -2.39 -0.02 1.12 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.04 1.67 6.24 -2.38 -0.01 1.66 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.17 4.36 8.06 -2.91 -0.02 4.34 16 36 H 0.17 4.91 8.06 -2.91 -0.02 4.88 16 37 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -63.06 311.77 4.23 -58.83 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 1.04 Total: 15.78 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 3.43 Total: -5.59 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.28 Total: -47.99 kcal Atomic # 8 Polarization: -61.19 SS G_CDS: -2.54 Total: -63.73 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Total: -63.06 4.23 -58.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071294529.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.984 kcal (2) G-P(sol) polarization free energy of solvation -63.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds