Wall clock time and date at job start Mon Mar 30 2020 07:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86795 * 120.00355 * 2 1 4 4 H 1.48506 * 109.47134 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47332 * 119.99706 * 3 2 1 6 6 H 1.48500 * 109.47216 * 240.00250 * 3 2 1 7 7 C 1.39933 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00535 * 154.67590 * 7 2 1 9 9 C 1.41298 * 119.99935 * 334.66626 * 7 2 1 10 10 C 1.40746 * 120.25166 * 334.46018 * 9 7 2 11 11 C 1.37620 * 119.78471 * 179.69129 * 10 9 7 12 12 Br 1.89099 * 119.84289 * 180.32096 * 11 10 9 13 13 C 1.38819 * 120.31297 * 0.61044 * 11 10 9 14 14 C 1.38552 * 120.51671 * 359.66659 * 13 11 10 15 15 Cl 1.73605 * 119.89686 * 180.02562 * 14 13 11 16 16 C 1.38092 * 120.20417 * 0.02562 * 14 13 11 17 17 F 1.35107 * 120.15798 * 179.97438 * 16 14 13 18 18 H 0.96997 * 120.00161 * 174.19945 * 1 2 3 19 19 H 1.07999 * 120.10272 * 359.97438 * 10 9 7 20 20 H 1.07998 * 119.74162 * 179.69320 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 1.2776 2.7465 0.0006 5 1 3.0963 1.6963 1.2125 6 1 3.0963 1.6963 -1.2125 7 6 2.0081 -1.2119 -0.0005 8 1 3.0102 -1.2568 -0.4006 9 6 1.4035 -2.3769 0.5225 10 6 0.3900 -2.2748 1.4938 11 6 -0.1968 -3.4156 1.9921 12 35 -1.5649 -3.2801 3.2904 13 6 0.2151 -4.6656 1.5505 14 6 1.2157 -4.7811 0.5990 15 17 1.7178 -6.3523 0.0578 16 6 1.8147 -3.6503 0.0800 17 9 2.7906 -3.7641 -0.8474 18 1 -0.4850 -0.8357 -0.0849 19 1 0.0707 -1.3042 1.8435 20 1 -0.2482 -5.5549 1.9514 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075898787.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:43 Heat of formation + Delta-G solvation = -52.399752 kcal Electronic energy + Delta-G solvation = -11921.637778 eV Core-core repulsion = 9296.917591 eV Total energy + Delta-G solvation = -2624.720187 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -47.61413 -37.99615 -35.94618 -34.26032 -31.20631 -29.75167 -28.07042 -25.62945 -21.78235 -21.15141 -18.32574 -16.41069 -15.75705 -15.19956 -14.57042 -14.22604 -13.51680 -13.26515 -12.65992 -12.35352 -12.20697 -11.50579 -11.23522 -11.21806 -10.58548 -10.56085 -10.52211 -9.98901 -9.75688 -9.63654 -9.27919 -8.08920 -7.81073 -7.50571 -4.87399 1.96095 2.14828 2.23933 2.86277 3.00909 3.05396 3.22506 3.78600 4.04036 4.84324 5.32500 5.94931 6.10682 6.27338 6.53801 6.92948 7.04074 7.17952 7.25635 7.51878 7.65751 8.13118 8.34168 9.65773 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.014823 B = 0.010302 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.475284 B = 2717.144191 C = 4497.144509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.037 3.963 3 Si 1.069 2.931 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.485 4.485 8 H 0.091 0.909 9 C 0.076 3.924 10 C -0.175 4.175 11 C -0.033 4.033 12 Br -0.084 7.084 13 C -0.212 4.212 14 C -0.009 4.009 15 Cl -0.091 7.091 16 C -0.012 4.012 17 F -0.144 7.144 18 H 0.303 0.697 19 H 0.130 0.870 20 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.574 -2.612 3.837 4.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.187 4.187 3 Si 0.891 3.109 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.512 4.512 8 H 0.109 0.891 9 C 0.071 3.929 10 C -0.196 4.196 11 C -0.113 4.113 12 Br 0.001 6.999 13 C -0.234 4.234 14 C -0.037 4.037 15 Cl -0.062 7.062 16 C -0.034 4.034 17 F -0.123 7.123 18 H 0.117 0.883 19 H 0.148 0.852 20 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.282 -1.059 4.289 4.972 hybrid contribution 0.626 -2.059 -0.533 2.217 sum -1.655 -3.118 3.756 5.154 Atomic orbital electron populations 1.70495 1.08167 1.34706 1.25779 1.27285 0.95564 1.04726 0.91171 0.83558 0.75718 0.73089 0.78529 1.19366 1.19492 1.19627 1.20652 1.03274 0.93280 1.33956 0.89139 1.17480 0.92430 0.90960 0.92021 1.21051 1.01800 0.96871 0.99908 1.21153 0.96761 0.95603 0.97743 1.96505 1.49819 1.98876 1.54667 1.19870 1.03233 0.95812 1.04469 1.20495 0.99620 0.83656 0.99931 1.98293 1.90867 1.27434 1.89652 1.17468 0.96488 0.92565 0.96849 1.91340 1.60491 1.96671 1.63831 0.88341 0.85234 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.70 12.32 55.55 0.68 -18.02 14 2 C 0.04 0.86 4.94 -17.34 -0.09 0.77 14 3 Si 1.07 19.70 30.00 -169.99 -5.10 14.60 14 4 H -0.27 -4.92 7.11 56.52 0.40 -4.52 14 5 H -0.27 -4.80 7.11 56.52 0.40 -4.40 14 6 H -0.27 -4.77 7.11 56.52 0.40 -4.37 14 7 C -0.49 -11.97 8.71 -37.78 -0.33 -12.30 14 8 H 0.09 2.21 7.80 -52.49 -0.41 1.80 14 9 C 0.08 1.89 5.30 -106.76 -0.57 1.33 14 10 C -0.17 -4.08 7.67 -38.86 -0.30 -4.38 14 11 C -0.03 -0.71 6.21 -39.59 -0.25 -0.95 14 12 Br -0.08 -1.50 33.69 -68.01 -2.29 -3.79 14 13 C -0.21 -4.45 9.56 -39.25 -0.38 -4.82 14 14 C -0.01 -0.19 6.32 -39.52 -0.25 -0.44 14 15 Cl -0.09 -1.74 28.60 -51.86 -1.48 -3.22 14 16 C -0.01 -0.30 7.28 -38.61 -0.28 -0.58 14 17 F -0.14 -3.49 16.28 2.25 0.04 -3.46 14 18 H 0.30 7.54 6.68 -40.82 -0.27 7.27 14 19 H 0.13 3.09 6.49 -52.49 -0.34 2.74 14 20 H 0.12 2.29 8.06 -52.49 -0.42 1.86 14 LS Contribution 227.24 15.07 3.42 3.42 Total: -1.00 -24.05 227.24 -7.40 -31.45 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -0.24 Total: 0.39 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -2.43 Total: -21.38 kcal Atomic # 7 Polarization: -18.70 SS G_CDS: 0.68 Total: -18.02 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.04 Total: -3.46 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.10 Total: 14.60 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -1.48 Total: -3.22 kcal Atomic # 35 Polarization: -1.50 SS G_CDS: -2.29 Total: -3.79 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -24.05 -7.40 -31.45 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075898787.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.952 kcal (2) G-P(sol) polarization free energy of solvation -24.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds