Wall clock time and date at job start Mon Mar 30 2020 07:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86795 * 120.00355 * 2 1 4 4 H 1.48506 * 109.47134 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47332 * 119.99706 * 3 2 1 6 6 H 1.48500 * 109.47216 * 240.00250 * 3 2 1 7 7 C 1.39933 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00535 * 154.67590 * 7 2 1 9 9 C 1.41298 * 119.99935 * 334.66626 * 7 2 1 10 10 C 1.40746 * 120.25166 * 334.46018 * 9 7 2 11 11 C 1.37620 * 119.78471 * 179.69129 * 10 9 7 12 12 Br 1.89099 * 119.84289 * 180.32096 * 11 10 9 13 13 C 1.38819 * 120.31297 * 0.61044 * 11 10 9 14 14 C 1.38552 * 120.51671 * 359.66659 * 13 11 10 15 15 Cl 1.73605 * 119.89686 * 180.02562 * 14 13 11 16 16 C 1.38092 * 120.20417 * 0.02562 * 14 13 11 17 17 F 1.35107 * 120.15798 * 179.97438 * 16 14 13 18 18 H 0.96997 * 120.00161 * 174.19945 * 1 2 3 19 19 H 1.07999 * 120.10272 * 359.97438 * 10 9 7 20 20 H 1.07998 * 119.74162 * 179.69320 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 1.2776 2.7465 0.0006 5 1 3.0963 1.6963 1.2125 6 1 3.0963 1.6963 -1.2125 7 6 2.0081 -1.2119 -0.0005 8 1 3.0102 -1.2568 -0.4006 9 6 1.4035 -2.3769 0.5225 10 6 0.3900 -2.2748 1.4938 11 6 -0.1968 -3.4156 1.9921 12 35 -1.5649 -3.2801 3.2904 13 6 0.2151 -4.6656 1.5505 14 6 1.2157 -4.7811 0.5990 15 17 1.7178 -6.3523 0.0578 16 6 1.8147 -3.6503 0.0800 17 9 2.7906 -3.7641 -0.8474 18 1 -0.4850 -0.8357 -0.0849 19 1 0.0707 -1.3042 1.8435 20 1 -0.2482 -5.5549 1.9514 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075898787.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:43 Heat of formation + Delta-G solvation = -62.906599 kcal Electronic energy + Delta-G solvation = -11922.093389 eV Core-core repulsion = 9296.917591 eV Total energy + Delta-G solvation = -2625.175798 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.48019 -39.76319 -37.60291 -36.01160 -32.89478 -31.52411 -29.78629 -27.43151 -23.55963 -22.92949 -20.10654 -18.21516 -17.55997 -16.93792 -16.42570 -15.75008 -15.25777 -15.03817 -14.41044 -14.13478 -13.94156 -13.15734 -12.85288 -12.78349 -12.33268 -12.15941 -11.96098 -11.63803 -11.40896 -11.20682 -10.97018 -9.86888 -9.59331 -9.29048 -6.74026 0.15751 0.38961 0.56850 1.16519 1.51489 1.56437 1.81625 2.25935 2.32730 3.02913 3.53692 4.20444 4.31694 4.51342 4.73291 5.15692 5.27379 5.37242 5.41567 5.68686 5.80319 6.30267 6.53442 7.81942 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.014823 B = 0.010302 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.475284 B = 2717.144191 C = 4497.144509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.010 3.990 3 Si 1.116 2.884 4 H -0.266 1.266 5 H -0.259 1.259 6 H -0.258 1.258 7 C -0.518 4.518 8 H 0.082 0.918 9 C 0.056 3.944 10 C -0.181 4.181 11 C -0.040 4.040 12 Br -0.045 7.045 13 C -0.199 4.199 14 C -0.012 4.012 15 Cl -0.064 7.064 16 C -0.039 4.039 17 F -0.151 7.151 18 H 0.289 0.711 19 H 0.121 0.879 20 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.838 -2.974 4.557 5.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.209 4.209 3 Si 0.932 3.068 4 H -0.190 1.190 5 H -0.183 1.183 6 H -0.182 1.182 7 C -0.544 4.544 8 H 0.100 0.900 9 C 0.051 3.949 10 C -0.203 4.203 11 C -0.119 4.119 12 Br 0.040 6.960 13 C -0.221 4.221 14 C -0.041 4.041 15 Cl -0.035 7.035 16 C -0.060 4.060 17 F -0.130 7.130 18 H 0.102 0.898 19 H 0.139 0.861 20 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.552 -1.454 5.011 5.809 hybrid contribution 0.635 -2.136 -0.692 2.333 sum -1.918 -3.590 4.319 5.935 Atomic orbital electron populations 1.70600 1.08732 1.33753 1.27769 1.28558 0.95538 1.07273 0.89539 0.83007 0.74918 0.69460 0.79437 1.18982 1.18348 1.18249 1.20795 1.03358 0.94439 1.35835 0.89987 1.17786 0.93091 0.91506 0.92515 1.20998 1.02004 0.97226 1.00058 1.21398 0.97240 0.95173 0.98135 1.96526 1.47809 1.98879 1.52808 1.20221 1.02118 0.96538 1.03206 1.20638 0.99251 0.84527 0.99640 1.98297 1.90654 1.25156 1.89391 1.17703 0.97304 0.93323 0.97716 1.91308 1.60826 1.96719 1.64162 0.89799 0.86136 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.72 12.32 21.83 0.27 -38.45 14 2 C 0.01 0.49 4.94 85.25 0.42 0.91 14 3 Si 1.12 39.29 30.00 68.60 2.06 41.35 14 4 H -0.27 -9.12 7.11 99.48 0.71 -8.42 14 5 H -0.26 -8.61 7.11 99.48 0.71 -7.91 14 6 H -0.26 -8.48 7.11 99.48 0.71 -7.78 14 7 C -0.52 -26.10 8.71 23.43 0.20 -25.90 14 8 H 0.08 4.13 7.80 -2.91 -0.02 4.11 14 9 C 0.06 2.82 5.30 -21.25 -0.11 2.70 14 10 C -0.18 -8.48 7.67 22.74 0.17 -8.31 14 11 C -0.04 -1.64 6.21 22.26 0.14 -1.50 14 12 Br -0.05 -1.53 33.69 -20.37 -0.69 -2.22 14 13 C -0.20 -7.95 9.56 22.48 0.22 -7.74 14 14 C -0.01 -0.52 6.32 22.31 0.14 -0.38 14 15 Cl -0.06 -2.31 28.60 -2.72 -0.08 -2.39 14 16 C -0.04 -1.90 7.28 22.90 0.17 -1.73 14 17 F -0.15 -7.38 16.28 44.97 0.73 -6.65 14 18 H 0.29 14.77 6.68 -92.71 -0.62 14.15 14 19 H 0.12 5.80 6.49 -2.91 -0.02 5.78 14 20 H 0.15 5.04 8.06 -2.91 -0.02 5.02 14 Total: -1.00 -50.43 227.24 5.08 -45.35 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 1.44 Total: 4.96 kcal Atomic # 6 Polarization: -43.29 SS G_CDS: 1.35 Total: -41.94 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.27 Total: -38.45 kcal Atomic # 9 Polarization: -7.38 SS G_CDS: 0.73 Total: -6.65 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.06 Total: 41.35 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.08 Total: -2.39 kcal Atomic # 35 Polarization: -1.53 SS G_CDS: -0.69 Total: -2.22 kcal Total: -50.43 5.08 -45.35 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075898787.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.556 kcal (2) G-P(sol) polarization free energy of solvation -50.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds