Wall clock time and date at job start Mon Mar 30 2020 07:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00119 * 2 1 4 4 H 1.48493 * 109.47292 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46711 * 300.00127 * 3 2 1 6 6 H 1.48496 * 109.46958 * 59.99535 * 3 2 1 7 7 C 1.37878 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99814 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00099 * 0.02562 * 7 2 1 10 10 S 1.81402 * 109.47324 * 180.02562 * 9 7 2 11 11 O 1.42095 * 109.47038 * 70.93835 * 10 9 7 12 12 C 1.76201 * 103.00193 * 179.97438 * 10 9 7 13 13 C 1.38220 * 120.00247 * 94.99444 * 12 10 9 14 14 C 1.38333 * 120.00021 * 179.97438 * 13 12 10 15 15 Cl 1.73598 * 119.99762 * 180.02562 * 14 13 12 16 16 C 1.38375 * 119.99804 * 359.97438 * 14 13 12 17 17 C 1.38176 * 120.00311 * 0.02562 * 16 14 13 18 18 C 1.38339 * 119.99805 * 275.25151 * 12 10 9 19 19 Cl 1.73599 * 120.00014 * 0.02562 * 18 12 10 20 20 H 0.97002 * 120.00501 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47276 * 59.99784 * 9 7 2 22 22 H 1.09002 * 109.47211 * 299.99776 * 9 7 2 23 23 H 1.08001 * 119.99620 * 359.97438 * 13 12 10 24 24 H 1.07999 * 119.99672 * 180.02562 * 16 14 13 25 25 H 1.08002 * 119.99736 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 16 2.4299 -3.8779 0.0021 11 8 3.0692 -3.9531 1.2688 12 6 1.3825 -5.2949 0.0027 13 6 1.0560 -5.9135 -1.1895 14 6 0.2342 -7.0263 -1.1889 15 17 -0.1753 -7.8036 -2.6862 16 6 -0.2605 -7.5203 0.0052 17 6 0.0658 -6.9019 1.1970 18 6 0.8827 -5.7850 1.1958 19 17 1.2868 -5.0037 2.6925 20 1 -0.4851 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 1.4426 -5.5281 -2.1214 24 1 -0.9018 -8.3893 0.0056 25 1 -0.3207 -7.2874 2.1289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788273.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:34 Heat of formation + Delta-G solvation = -44.541504 kcal Electronic energy + Delta-G solvation = -14650.082542 eV Core-core repulsion = 11806.343976 eV Total energy + Delta-G solvation = -2843.738566 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.968 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.31807 -37.79913 -37.19002 -36.43270 -35.18727 -32.40483 -31.48691 -30.59454 -25.31121 -24.22254 -23.79224 -19.50893 -18.50484 -17.87929 -17.08703 -16.93371 -16.65121 -15.75331 -15.43357 -14.98008 -14.73182 -14.53522 -14.27276 -13.52765 -13.38538 -13.10862 -13.02460 -12.81427 -12.62032 -12.29857 -12.03436 -11.94161 -11.75503 -11.55238 -10.79583 -10.66142 -10.34112 -9.68348 -9.07655 -8.26118 -6.39967 -0.36132 -0.03535 0.92369 0.93351 1.30350 1.40684 1.42853 1.55788 2.03246 2.37620 2.39744 3.05670 3.20813 3.68238 3.90257 4.12103 4.21986 4.62519 4.72976 4.90885 4.96713 5.08375 5.17661 5.43595 5.57985 5.96791 6.74817 7.29093 8.86554 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.021728 B = 0.005776 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.343155 B = 4846.356772 C = 5557.345686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.962 3.038 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.287 1.287 7 C -0.532 4.532 8 H 0.070 0.930 9 C -0.269 4.269 10 S 1.359 4.641 11 O -0.890 6.890 12 C -0.457 4.457 13 C -0.022 4.022 14 C -0.054 4.054 15 Cl -0.046 7.046 16 C -0.063 4.063 17 C -0.122 4.122 18 C -0.007 4.007 19 Cl -0.063 7.063 20 H 0.265 0.735 21 H 0.067 0.933 22 H 0.003 0.997 23 H 0.184 0.816 24 H 0.176 0.824 25 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 -15.904 -6.222 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.785 3.215 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.213 1.213 7 C -0.571 4.571 8 H 0.088 0.912 9 C -0.408 4.408 10 S 1.557 4.443 11 O -0.885 6.885 12 C -0.552 4.552 13 C -0.041 4.041 14 C -0.082 4.082 15 Cl -0.017 7.017 16 C -0.082 4.082 17 C -0.142 4.142 18 C -0.035 4.035 19 Cl -0.034 7.034 20 H 0.074 0.926 21 H 0.085 0.915 22 H 0.022 0.978 23 H 0.201 0.799 24 H 0.193 0.807 25 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.874 -15.825 -6.198 17.018 hybrid contribution -1.499 0.966 2.196 2.829 sum -0.624 -14.858 -4.002 15.400 Atomic orbital electron populations 1.70098 1.07849 1.27939 1.50362 1.25897 0.95725 1.03164 0.94018 0.85443 0.79482 0.78587 0.77939 1.18027 1.19136 1.21281 1.20921 0.93283 0.90449 1.52447 0.91174 1.25085 1.07027 1.07677 1.00981 1.68559 0.86570 0.81257 1.07917 1.93033 1.65604 1.83855 1.46057 1.28141 1.14005 1.17652 0.95395 1.21085 0.93426 0.91961 0.97621 1.21198 1.01387 0.96986 0.88607 1.98383 1.92479 1.79718 1.31091 1.21454 0.97656 0.99847 0.89245 1.21367 0.97977 0.94259 1.00558 1.21345 0.98234 0.96150 0.87796 1.98440 1.92403 1.79904 1.32605 0.92574 0.91509 0.97830 0.79864 0.80689 0.82319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.77 13.29 21.45 0.28 -54.49 15 2 C 0.01 0.70 5.46 84.66 0.46 1.16 15 3 Si 0.96 43.13 29.54 68.60 2.03 45.15 15 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 15 5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 15 6 H -0.29 -12.95 7.11 99.48 0.71 -12.25 15 7 C -0.53 -29.08 9.13 25.60 0.23 -28.85 15 8 H 0.07 3.64 7.71 -2.91 -0.02 3.62 15 9 C -0.27 -13.39 5.64 71.23 0.40 -12.99 15 10 S 1.36 51.26 13.23 -56.49 -0.75 50.52 15 11 O -0.89 -42.20 14.61 -148.98 -2.18 -44.38 15 12 C -0.46 -14.96 5.59 22.29 0.12 -14.84 15 13 C -0.02 -0.53 9.54 22.29 0.21 -0.32 15 14 C -0.05 -1.19 6.32 22.32 0.14 -1.05 15 15 Cl -0.05 -0.83 28.96 -2.72 -0.08 -0.91 15 16 C -0.06 -1.32 9.83 22.29 0.22 -1.10 15 17 C -0.12 -3.17 9.83 22.29 0.22 -2.95 15 18 C -0.01 -0.25 6.28 22.33 0.14 -0.11 15 19 Cl -0.06 -2.56 25.57 -2.72 -0.07 -2.62 15 20 H 0.27 14.75 8.31 -92.71 -0.77 13.98 15 21 H 0.07 3.25 8.14 -2.39 -0.02 3.23 15 22 H 0.00 0.18 8.14 -2.39 -0.02 0.16 15 23 H 0.18 3.21 8.06 -2.91 -0.02 3.19 15 24 H 0.18 2.38 8.06 -2.91 -0.02 2.35 15 25 H 0.16 3.37 8.06 -2.91 -0.02 3.34 15 Total: -1.00 -73.54 270.59 2.61 -70.93 By element: Atomic # 1 Polarization: -4.37 SS G_CDS: 1.22 Total: -3.16 kcal Atomic # 6 Polarization: -63.20 SS G_CDS: 2.15 Total: -61.05 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.28 Total: -54.49 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -2.18 Total: -44.38 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 51.26 SS G_CDS: -0.75 Total: 50.52 kcal Atomic # 17 Polarization: -3.39 SS G_CDS: -0.15 Total: -3.53 kcal Total: -73.54 2.61 -70.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788273.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.386 kcal (2) G-P(sol) polarization free energy of solvation -73.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds