Wall clock time and date at job start Mon Mar 30 2020 07:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99889 * 2 1 4 4 H 1.48499 * 109.47271 * 270.00380 * 3 2 1 5 5 H 1.48499 * 109.47399 * 30.00284 * 3 2 1 6 6 H 1.48500 * 109.47278 * 150.00456 * 3 2 1 7 7 C 1.37875 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00002 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00147 * 359.97438 * 7 2 1 10 10 S 1.81394 * 109.47481 * 180.02562 * 9 7 2 11 11 O 1.42105 * 110.54207 * 68.37696 * 10 9 7 12 12 O 1.42101 * 110.54520 * 291.62874 * 10 9 7 13 13 C 1.76196 * 104.45115 * 179.97438 * 10 9 7 14 14 C 1.38264 * 119.97320 * 269.97659 * 13 10 9 15 15 C 1.38193 * 120.05336 * 179.97438 * 14 13 10 16 16 C 1.38447 * 119.98583 * 0.04183 * 15 14 13 17 17 F 1.35098 * 120.03314 * 180.25332 * 16 15 14 18 18 C 1.38555 * 119.93778 * 359.97438 * 16 15 14 19 19 Cl 1.73602 * 120.02332 * 180.02562 * 18 16 15 20 20 C 1.38218 * 119.96621 * 90.00392 * 13 10 9 21 21 H 0.97000 * 119.99939 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46873 * 60.00209 * 9 7 2 23 23 H 1.09007 * 109.46974 * 300.00453 * 9 7 2 24 24 H 1.07998 * 119.97540 * 0.02562 * 14 13 10 25 25 H 1.08000 * 120.00965 * 180.02562 * 15 14 13 26 26 H 1.07992 * 119.99809 * 0.02562 * 20 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 16 2.4298 -3.8779 -0.0005 11 8 3.1266 -3.9383 1.2365 12 8 3.1267 -3.9383 -1.2375 13 6 1.4187 -5.3209 0.0002 14 6 1.0231 -5.8865 1.1983 15 6 0.2296 -7.0179 1.2008 16 6 -0.1690 -7.5862 0.0029 17 9 -0.9490 -8.6893 0.0043 18 6 0.2280 -7.0192 -1.1974 19 17 -0.2711 -7.7295 -2.7007 20 6 1.0221 -5.8866 -1.1969 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 1.3337 -5.4433 2.1328 25 1 -0.0794 -7.4589 2.1370 26 1 1.3324 -5.4445 -2.1320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084252527.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:22 Heat of formation + Delta-G solvation = -123.045934 kcal Electronic energy + Delta-G solvation = -16816.837060 eV Core-core repulsion = 13541.357911 eV Total energy + Delta-G solvation = -3275.479148 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 277.997 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.30378 -40.27882 -37.99569 -37.74578 -36.83217 -35.38827 -32.34695 -31.94457 -31.01517 -25.63097 -24.55100 -24.33036 -20.24147 -19.34341 -18.90274 -18.10938 -18.05196 -17.29727 -17.03147 -16.49524 -16.27270 -16.06171 -15.14574 -14.79977 -14.60762 -14.38655 -14.31284 -14.03242 -13.41582 -13.02069 -12.98988 -12.92097 -12.72206 -12.70879 -12.52306 -12.38808 -11.91108 -11.73506 -11.09405 -10.75247 -10.40431 -10.13074 -8.38915 -6.56781 -0.81102 -0.54523 -0.23074 0.73496 1.42882 1.43332 1.55189 1.90650 2.16736 2.36299 2.70635 2.95762 3.05057 3.23893 3.43346 3.81086 3.91286 4.13336 4.43851 4.51679 4.70538 4.74047 4.80180 4.85989 5.35321 5.36476 5.73380 6.53031 7.15217 8.73166 Molecular weight = 278.00amu Principal moments of inertia in cm(-1) A = 0.028201 B = 0.004932 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.630950 B = 5675.819398 C = 5850.715399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.029 3.971 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.408 4.408 10 S 2.498 3.502 11 O -0.973 6.973 12 O -0.979 6.979 13 C -0.660 4.660 14 C 0.005 3.995 15 C -0.147 4.147 16 C 0.154 3.846 17 F -0.118 7.118 18 C -0.105 4.105 19 Cl -0.039 7.039 20 C 0.002 3.998 21 H 0.274 0.726 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.175 0.825 25 H 0.193 0.807 26 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.649 -13.326 0.864 13.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.175 4.175 3 Si 0.784 3.216 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.606 4.606 8 H 0.087 0.913 9 C -0.542 4.542 10 S 2.683 3.317 11 O -0.970 6.970 12 O -0.976 6.976 13 C -0.747 4.747 14 C -0.013 4.013 15 C -0.167 4.167 16 C 0.133 3.867 17 F -0.096 7.096 18 C -0.134 4.134 19 Cl -0.010 7.010 20 C -0.017 4.017 21 H 0.083 0.917 22 H 0.105 0.895 23 H 0.110 0.890 24 H 0.193 0.807 25 H 0.210 0.790 26 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.983 -13.393 0.723 13.559 hybrid contribution -0.812 0.363 -0.400 0.975 sum -2.795 -13.031 0.324 13.331 Atomic orbital electron populations 1.70015 1.07439 1.28911 1.47982 1.25760 0.95890 1.02893 0.92916 0.85495 0.79030 0.77909 0.79209 1.19125 1.19595 1.18534 1.20784 0.93305 0.90381 1.56129 0.91251 1.27525 1.10189 1.09249 1.07214 1.05423 0.77143 0.75787 0.73371 1.93438 1.71433 1.86912 1.45206 1.93436 1.71684 1.86938 1.45579 1.30809 1.21202 1.23230 0.99436 1.21301 0.89822 0.92583 0.97613 1.21613 0.99986 0.97121 0.97950 1.17765 0.91277 0.84313 0.93332 1.91574 1.71220 1.49496 1.97276 1.21084 1.05267 0.99196 0.87804 1.98388 1.89979 1.82731 1.29893 1.20868 0.90547 0.91646 0.98667 0.91695 0.89472 0.88962 0.80720 0.79011 0.82071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.36 13.29 21.45 0.28 -49.08 15 2 C 0.03 1.53 5.46 84.65 0.46 1.99 15 3 Si 0.96 40.92 29.54 68.60 2.03 42.94 15 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 15 7 C -0.57 -29.90 9.13 25.60 0.23 -29.67 15 8 H 0.07 3.58 7.71 -2.91 -0.02 3.56 15 9 C -0.41 -18.47 5.74 71.24 0.41 -18.06 15 10 S 2.50 98.01 5.08 -56.49 -0.29 97.73 15 11 O -0.97 -41.23 17.12 -127.65 -2.19 -43.42 15 12 O -0.98 -42.91 17.13 -127.65 -2.19 -45.10 15 13 C -0.66 -20.46 5.66 22.27 0.13 -20.33 15 14 C 0.01 0.14 9.47 22.27 0.21 0.35 15 15 C -0.15 -3.01 10.03 22.31 0.22 -2.79 15 16 C 0.15 3.62 7.28 22.40 0.16 3.78 15 17 F -0.12 -2.63 16.84 44.97 0.76 -1.88 15 18 C -0.11 -2.78 6.33 22.37 0.14 -2.64 15 19 Cl -0.04 -0.95 28.62 -2.72 -0.08 -1.02 15 20 C 0.00 0.06 9.25 22.29 0.21 0.27 15 21 H 0.27 13.90 8.31 -92.71 -0.77 13.13 15 22 H 0.09 3.93 8.14 -2.39 -0.02 3.91 15 23 H 0.09 4.06 8.14 -2.39 -0.02 4.04 15 24 H 0.18 3.80 7.57 -2.91 -0.02 3.78 15 25 H 0.19 2.37 8.06 -2.91 -0.02 2.35 15 26 H 0.16 4.63 7.57 -2.91 -0.02 4.60 15 Total: -1.00 -63.99 272.75 1.73 -62.27 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.22 Total: 4.66 kcal Atomic # 6 Polarization: -69.28 SS G_CDS: 2.18 Total: -67.10 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.28 Total: -49.08 kcal Atomic # 8 Polarization: -84.15 SS G_CDS: -4.37 Total: -88.52 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.76 Total: -1.88 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: 98.01 SS G_CDS: -0.29 Total: 97.73 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.02 kcal Total: -63.99 1.73 -62.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084252527.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.780 kcal (2) G-P(sol) polarization free energy of solvation -63.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds