Wall clock time and date at job start Mon Mar 30 2020 07:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99693 * 2 1 4 4 H 1.48495 * 109.46982 * 269.99641 * 3 2 1 5 5 H 1.48504 * 109.47233 * 29.99432 * 3 2 1 6 6 H 1.48501 * 109.46992 * 149.99351 * 3 2 1 7 7 C 1.37871 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00254 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47266 * 179.97438 * 9 7 2 11 11 C 1.76199 * 102.99676 * 180.02562 * 10 9 7 12 12 C 1.38803 * 122.63455 * 0.24775 * 11 10 9 13 13 C 1.33388 * 114.89192 * 180.29271 * 12 11 10 14 14 S 1.75848 * 109.71607 * 359.73428 * 13 12 11 15 15 C 1.33869 * 122.62206 * 180.02562 * 11 10 9 16 16 Br 1.89100 * 125.20585 * 359.97438 * 15 11 10 17 17 H 0.97000 * 120.00450 * 0.02562 * 1 2 3 18 18 H 1.09005 * 109.47050 * 59.99778 * 9 7 2 19 19 H 1.08996 * 109.47326 * 300.00098 * 9 7 2 20 20 H 1.08001 * 122.55167 * 0.02562 * 12 11 10 21 21 H 1.07997 * 125.13856 * 179.72980 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4300 -3.8779 0.0005 11 6 1.3826 -5.2948 -0.0002 12 6 -0.0023 -5.2019 -0.0057 13 6 -0.6435 -6.3715 0.0007 14 16 0.5229 -7.6874 0.0068 15 6 1.8602 -6.5453 0.0001 16 35 3.6927 -7.0124 0.0006 17 1 -0.4851 0.8400 -0.0004 18 1 0.6248 -2.5571 -0.8897 19 1 0.6241 -2.5567 0.8902 20 1 -0.5212 -4.2547 -0.0103 21 1 -1.7168 -6.4920 0.0020 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090627375.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:44 Heat of formation + Delta-G solvation = 21.177306 kcal Electronic energy + Delta-G solvation = -9757.926568 eV Core-core repulsion = 7704.653804 eV Total energy + Delta-G solvation = -2053.272764 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 277.913 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.48441 -33.28695 -31.61840 -28.74169 -28.22609 -24.29398 -22.61810 -19.58905 -17.57382 -16.77572 -15.79235 -14.77674 -14.11562 -13.62891 -13.12525 -12.74343 -12.48534 -12.36956 -12.22153 -11.05046 -10.96095 -10.71868 -10.69300 -10.30224 -10.00405 -9.68844 -9.10855 -9.09344 -8.66290 -8.38861 -6.68691 -6.29897 -4.35624 0.96437 1.31362 1.74196 2.12266 2.74883 2.78579 3.21181 3.27244 3.32150 3.59241 4.27549 5.07955 5.16883 5.52782 5.97726 6.18621 6.36046 6.90874 6.94059 7.63124 7.85657 8.65671 9.28749 10.81363 Molecular weight = 277.91amu Principal moments of inertia in cm(-1) A = 0.032096 B = 0.005819 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.184974 B = 4810.951862 C = 5667.988271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.069 3.931 3 Si 0.908 3.092 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.519 4.519 8 H 0.069 0.931 9 C 0.061 3.939 10 S -0.100 6.100 11 C -0.053 4.053 12 C -0.131 4.131 13 C -0.187 4.187 14 S 0.123 5.877 15 C -0.208 4.208 16 Br 0.007 6.993 17 H 0.267 0.733 18 H 0.044 0.956 19 H 0.044 0.956 20 H 0.155 0.845 21 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.638 -14.739 0.004 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.558 4.558 8 H 0.087 0.913 9 C -0.087 4.087 10 S 0.145 5.855 11 C -0.181 4.181 12 C -0.164 4.164 13 C -0.325 4.325 14 S 0.382 5.618 15 C -0.417 4.417 16 Br 0.090 6.910 17 H 0.077 0.923 18 H 0.062 0.938 19 H 0.063 0.937 20 H 0.172 0.828 21 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.245 -16.166 0.018 16.489 hybrid contribution -1.454 2.442 -0.018 2.842 sum 1.791 -13.724 0.000 13.840 Atomic orbital electron populations 1.69938 1.06172 1.27592 1.49005 1.24948 0.95003 0.99349 0.94309 0.86317 0.79762 0.81953 0.78463 1.20226 1.20872 1.19433 1.20594 0.93496 0.88471 1.53249 0.91281 1.21462 0.94839 0.91400 1.00955 1.85648 1.15442 0.95766 1.88626 1.21086 0.97381 0.97898 1.01759 1.20377 0.92215 1.00109 1.03743 1.25686 1.03180 0.95396 1.08209 1.83899 0.94139 1.08848 1.74943 1.25172 0.95101 0.97124 1.24304 1.96586 1.04419 1.92119 1.97846 0.92319 0.93764 0.93747 0.82793 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.99 13.29 55.43 0.74 -24.25 14 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 14 3 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 14 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 14 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 14 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 14 7 C -0.52 -14.09 9.13 -34.44 -0.31 -14.41 14 8 H 0.07 1.87 7.71 -52.48 -0.40 1.46 14 9 C 0.06 1.51 4.23 36.00 0.15 1.66 14 10 S -0.10 -2.17 21.20 -107.50 -2.28 -4.45 14 11 C -0.05 -1.01 6.02 -40.91 -0.25 -1.26 14 12 C -0.13 -2.26 9.47 -41.07 -0.39 -2.65 14 13 C -0.19 -2.61 11.22 29.04 0.33 -2.29 14 14 S 0.12 1.69 23.33 -107.50 -2.51 -0.82 14 15 C -0.21 -3.53 6.97 29.20 0.20 -3.33 14 16 Br 0.01 0.10 33.32 -68.01 -2.27 -2.17 14 17 H 0.27 7.06 8.31 -40.82 -0.34 6.72 14 18 H 0.04 1.14 7.91 -51.92 -0.41 0.73 14 19 H 0.04 1.14 7.93 -51.93 -0.41 0.73 14 20 H 0.15 2.78 6.57 -52.49 -0.35 2.43 14 21 H 0.17 1.81 8.06 -52.49 -0.42 1.38 14 LS Contribution 240.99 15.07 3.63 3.63 Total: -1.00 -27.64 240.99 -9.20 -36.84 By element: Atomic # 1 Polarization: -2.91 SS G_CDS: -1.13 Total: -4.04 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -0.37 Total: -20.51 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.74 Total: -24.25 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -4.79 Total: -5.27 kcal Atomic # 35 Polarization: 0.10 SS G_CDS: -2.27 Total: -2.17 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.64 -9.20 -36.84 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090627375.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.021 kcal (2) G-P(sol) polarization free energy of solvation -27.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds