Wall clock time and date at job start Mon Mar 30 2020 07:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99693 * 2 1 4 4 H 1.48495 * 109.46982 * 269.99641 * 3 2 1 5 5 H 1.48504 * 109.47233 * 29.99432 * 3 2 1 6 6 H 1.48501 * 109.46992 * 149.99351 * 3 2 1 7 7 C 1.37871 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00254 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47266 * 179.97438 * 9 7 2 11 11 C 1.76199 * 102.99676 * 180.02562 * 10 9 7 12 12 C 1.38803 * 122.63455 * 0.24775 * 11 10 9 13 13 C 1.33388 * 114.89192 * 180.29271 * 12 11 10 14 14 S 1.75848 * 109.71607 * 359.73428 * 13 12 11 15 15 C 1.33869 * 122.62206 * 180.02562 * 11 10 9 16 16 Br 1.89100 * 125.20585 * 359.97438 * 15 11 10 17 17 H 0.97000 * 120.00450 * 0.02562 * 1 2 3 18 18 H 1.09005 * 109.47050 * 59.99778 * 9 7 2 19 19 H 1.08996 * 109.47326 * 300.00098 * 9 7 2 20 20 H 1.08001 * 122.55167 * 0.02562 * 12 11 10 21 21 H 1.07997 * 125.13856 * 179.72980 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4300 -3.8779 0.0005 11 6 1.3826 -5.2948 -0.0002 12 6 -0.0023 -5.2019 -0.0057 13 6 -0.6435 -6.3715 0.0007 14 16 0.5229 -7.6874 0.0068 15 6 1.8602 -6.5453 0.0001 16 35 3.6927 -7.0124 0.0006 17 1 -0.4851 0.8400 -0.0004 18 1 0.6248 -2.5571 -0.8897 19 1 0.6241 -2.5567 0.8902 20 1 -0.5212 -4.2547 -0.0103 21 1 -1.7168 -6.4920 0.0020 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090627375.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:44 Heat of formation + Delta-G solvation = 6.441162 kcal Electronic energy + Delta-G solvation = -9758.565575 eV Core-core repulsion = 7704.653804 eV Total energy + Delta-G solvation = -2053.911771 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 277.913 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.80290 -35.34773 -32.91596 -30.76987 -29.51866 -25.95906 -24.32610 -20.93866 -18.92227 -18.62494 -17.46755 -16.53999 -15.70039 -15.09724 -14.47649 -14.42758 -14.24879 -14.06498 -13.77280 -12.76807 -12.68003 -12.25282 -12.01162 -11.97607 -11.57591 -11.39046 -10.85579 -10.81501 -10.37569 -9.61018 -8.36312 -8.29127 -6.50318 -0.32099 0.03401 0.35321 0.88431 1.26232 1.39289 1.41530 1.41774 1.54585 1.85787 2.35575 2.99156 4.05963 4.16565 4.69983 4.86551 4.88397 4.95364 5.03242 5.53273 5.81640 6.56509 7.18481 8.75691 Molecular weight = 277.91amu Principal moments of inertia in cm(-1) A = 0.032096 B = 0.005819 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.184974 B = 4810.951862 C = 5667.988271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.073 3.927 10 S -0.115 6.115 11 C -0.075 4.075 12 C -0.166 4.166 13 C -0.166 4.166 14 S 0.207 5.793 15 C -0.226 4.226 16 Br 0.017 6.983 17 H 0.272 0.728 18 H 0.024 0.976 19 H 0.024 0.976 20 H 0.135 0.865 21 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.528 -16.081 0.000 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.075 4.075 10 S 0.128 5.872 11 C -0.203 4.203 12 C -0.199 4.199 13 C -0.304 4.304 14 S 0.467 5.533 15 C -0.433 4.433 16 Br 0.100 6.900 17 H 0.081 0.919 18 H 0.042 0.958 19 H 0.042 0.958 20 H 0.153 0.847 21 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.130 -17.552 0.013 17.829 hybrid contribution -1.475 2.607 -0.016 2.995 sum 1.655 -14.945 -0.004 15.036 Atomic orbital electron populations 1.70041 1.07621 1.28711 1.49513 1.25870 0.95885 1.02932 0.93550 0.85278 0.78530 0.77468 0.78821 1.19383 1.20015 1.18899 1.20937 0.93586 0.89940 1.53662 0.91650 1.21063 0.94912 0.92667 0.98857 1.85357 1.15300 0.96298 1.90250 1.20997 0.97767 0.97049 1.04514 1.20235 0.91767 1.00774 1.07171 1.26167 1.05265 0.94466 1.04491 1.83675 0.91158 1.06186 1.72295 1.25616 0.97092 0.97827 1.22758 1.96596 1.03842 1.91756 1.97777 0.91946 0.95812 0.95804 0.84707 0.77496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.84 13.29 21.45 0.28 -52.55 14 2 C 0.02 1.06 5.46 84.65 0.46 1.52 14 3 Si 0.98 42.78 29.54 68.60 2.03 44.81 14 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 14 5 H -0.28 -11.61 7.11 99.48 0.71 -10.91 14 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 14 7 C -0.54 -30.36 9.13 25.60 0.23 -30.13 14 8 H 0.07 3.62 7.71 -2.91 -0.02 3.60 14 9 C 0.07 3.80 4.23 71.24 0.30 4.10 14 10 S -0.12 -5.13 21.20 -56.49 -1.20 -6.33 14 11 C -0.07 -2.84 6.02 21.41 0.13 -2.71 14 12 C -0.17 -5.72 9.47 21.31 0.20 -5.52 14 13 C -0.17 -4.18 11.22 66.72 0.75 -3.43 14 14 S 0.21 4.97 23.33 -56.49 -1.32 3.65 14 15 C -0.23 -7.31 6.97 66.83 0.47 -6.84 14 16 Br 0.02 0.49 33.32 -20.37 -0.68 -0.19 14 17 H 0.27 14.52 8.31 -92.71 -0.77 13.75 14 18 H 0.02 1.30 7.91 -2.39 -0.02 1.28 14 19 H 0.02 1.30 7.93 -2.39 -0.02 1.28 14 20 H 0.14 5.11 6.57 -2.91 -0.02 5.09 14 21 H 0.21 3.55 8.06 -2.91 -0.02 3.53 14 Total: -1.00 -60.16 240.99 2.91 -57.25 By element: Atomic # 1 Polarization: -4.88 SS G_CDS: 1.25 Total: -3.64 kcal Atomic # 6 Polarization: -45.54 SS G_CDS: 2.54 Total: -43.00 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.28 Total: -52.55 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -2.52 Total: -2.68 kcal Atomic # 35 Polarization: 0.49 SS G_CDS: -0.68 Total: -0.19 kcal Total: -60.16 2.91 -57.25 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090627375.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.696 kcal (2) G-P(sol) polarization free energy of solvation -60.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds