Wall clock time and date at job start Mon Mar 30 2020 07:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45866 * 116.51158 * 2 1 4 4 O 1.48048 * 106.16834 * 161.43838 * 3 2 1 5 5 C 1.45865 * 106.16442 * 0.02562 * 4 3 2 6 6 C 1.52997 * 116.50658 * 198.56029 * 5 4 3 7 7 O 1.45863 * 103.47899 * 68.43919 * 5 4 3 8 8 O 1.45870 * 117.18011 * 236.70803 * 2 1 3 9 9 C 1.56988 * 100.05827 * 325.43815 * 5 4 3 10 10 C 1.53000 * 112.43857 * 296.70141 * 9 5 4 11 11 C 1.50697 * 109.47174 * 279.36921 * 10 9 5 12 12 H 1.08005 * 119.99966 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00225 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99366 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00125 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47179 * 60.00268 * 15 13 11 17 17 H 1.48503 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47420 * 300.00284 * 15 13 11 19 19 H 1.09005 * 109.47303 * 301.93431 * 1 2 3 20 20 H 1.08998 * 109.47172 * 61.93013 * 1 2 3 21 21 H 1.08995 * 109.47436 * 181.92773 * 1 2 3 22 22 H 1.09002 * 109.47507 * 178.07025 * 6 5 4 23 23 H 1.08998 * 109.47151 * 298.06812 * 6 5 4 24 24 H 1.08999 * 109.47436 * 58.06755 * 6 5 4 25 25 H 1.09001 * 112.44010 * 169.07447 * 9 5 4 26 26 H 1.08999 * 109.46796 * 39.37039 * 10 9 5 27 27 H 1.09003 * 109.47339 * 159.36889 * 10 9 5 28 28 H 0.97005 * 119.99540 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.1810 1.3053 0.0000 4 8 3.5713 1.0725 0.4526 5 6 3.6831 -0.3606 0.7004 6 6 4.8514 -0.8126 1.5788 7 8 3.5870 -0.9446 -0.6328 8 8 2.1962 -0.7123 -1.0847 9 6 2.2380 -0.6599 1.2357 10 6 1.9355 0.0755 2.5429 11 6 2.5433 -0.6800 3.6965 12 1 3.0909 -1.5931 3.5154 13 6 2.4011 -0.2049 4.9831 14 7 1.7347 0.9072 5.2034 15 14 3.1551 -1.1410 6.4129 16 1 4.6253 -1.2323 6.2246 17 1 2.8625 -0.4266 7.6815 18 1 2.5776 -2.5079 6.4694 19 1 -0.3634 0.5436 0.8722 20 1 -0.3633 0.4836 -0.9068 21 1 -0.3634 -1.0270 0.0346 22 1 4.8058 -1.8930 1.7164 23 1 5.7923 -0.5472 1.0968 24 1 4.7885 -0.3198 2.5489 25 1 2.0348 -1.7282 1.3102 26 1 2.3596 1.0788 2.5018 27 1 0.8563 0.1426 2.6807 28 1 1.6344 1.2412 6.1086 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095555666.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:32 Heat of formation + Delta-G solvation = -3.133953 kcal Electronic energy + Delta-G solvation = -15683.488609 eV Core-core repulsion = 12900.624794 eV Total energy + Delta-G solvation = -2782.863816 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.19982 -35.02080 -34.73020 -33.70880 -31.71817 -31.46903 -29.19793 -28.79069 -26.05819 -22.82243 -20.25226 -20.19256 -18.25304 -16.71422 -16.49687 -15.09865 -14.85377 -14.71435 -14.45866 -14.25079 -12.90236 -12.76497 -12.67404 -12.44805 -12.37999 -12.31948 -11.96595 -11.59719 -11.48137 -11.34849 -11.02561 -10.73005 -10.42863 -10.13816 -9.69593 -9.62366 -9.18735 -8.52326 -6.17174 -4.22241 2.04169 2.18315 3.22201 3.28750 3.29072 3.88723 4.19610 4.30200 4.38330 4.46003 5.18832 5.21622 5.40906 5.43337 5.48306 5.77123 5.84485 6.03302 6.09983 6.14854 6.30903 6.36511 6.55308 7.35371 7.52178 7.77563 8.13266 8.81435 9.42150 10.93527 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.039914 B = 0.010802 C = 0.009652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.335056 B = 2591.607914 C = 2900.378098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.169 3.831 3 O -0.199 6.199 4 O -0.193 6.193 5 C 0.186 3.814 6 C -0.097 4.097 7 O -0.209 6.209 8 O -0.210 6.210 9 C -0.141 4.141 10 C 0.034 3.966 11 C -0.529 4.529 12 H 0.059 0.941 13 C 0.063 3.937 14 N -0.887 5.887 15 Si 0.893 3.107 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.276 1.276 19 H 0.103 0.897 20 H 0.077 0.923 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.069 0.931 24 H 0.119 0.881 25 H 0.108 0.892 26 H 0.040 0.960 27 H 0.032 0.968 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.166 -3.400 -6.077 6.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.091 3.909 3 O -0.159 6.159 4 O -0.152 6.152 5 C 0.108 3.892 6 C -0.154 4.154 7 O -0.170 6.170 8 O -0.171 6.171 9 C -0.160 4.160 10 C -0.003 4.003 11 C -0.567 4.567 12 H 0.077 0.923 13 C -0.140 4.140 14 N -0.524 5.524 15 Si 0.721 3.279 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.201 1.201 19 H 0.121 0.879 20 H 0.096 0.904 21 H 0.112 0.888 22 H 0.109 0.891 23 H 0.088 0.912 24 H 0.137 0.863 25 H 0.126 0.874 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.262 -3.057 -6.308 7.014 hybrid contribution 0.311 -0.546 0.884 1.084 sum 0.573 -3.603 -5.424 6.537 Atomic orbital electron populations 1.21270 0.84224 1.05041 1.04985 1.26540 0.95123 0.81072 0.88183 1.93284 1.11329 1.24778 1.86478 1.93307 1.09509 1.24690 1.87726 1.26444 0.99864 0.79436 0.83461 1.21388 0.91800 1.03187 0.99013 1.93268 1.09619 1.79125 1.34968 1.93253 1.10802 1.78373 1.34630 1.25695 0.89023 1.03425 0.97860 1.19057 0.98184 0.96190 0.86851 1.21023 1.35459 1.09188 0.91049 0.92254 1.24988 0.95126 0.94927 0.98936 1.69947 1.40373 1.20638 1.21489 0.86634 0.79771 0.79920 0.81591 1.20026 1.21170 1.20145 0.87882 0.90362 0.88831 0.89148 0.91159 0.86274 0.87438 0.94220 0.94979 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.02 37.15 0.37 -1.06 15 2 C 0.17 3.29 2.16 -24.59 -0.05 3.24 15 3 O -0.20 -4.45 12.14 -70.64 -0.86 -5.31 15 4 O -0.19 -4.42 11.81 -70.64 -0.83 -5.26 15 5 C 0.19 3.81 2.16 -24.57 -0.05 3.76 15 6 C -0.10 -1.66 9.21 37.16 0.34 -1.32 15 7 O -0.21 -4.41 12.70 -70.64 -0.90 -5.31 15 8 O -0.21 -4.34 12.69 -70.64 -0.90 -5.24 15 9 C -0.14 -2.91 2.64 -86.31 -0.23 -3.14 15 10 C 0.03 0.82 4.33 -27.88 -0.12 0.70 15 11 C -0.53 -13.42 7.37 -34.44 -0.25 -13.67 15 12 H 0.06 1.42 7.25 -52.48 -0.38 1.04 15 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 14 N -0.89 -24.98 13.29 55.43 0.74 -24.25 15 15 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 15 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 17 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 19 H 0.10 1.50 7.51 -51.93 -0.39 1.11 15 20 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 21 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.09 1.37 8.14 -51.93 -0.42 0.94 15 23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.12 2.23 6.87 -51.93 -0.36 1.87 15 25 H 0.11 2.12 8.13 -51.93 -0.42 1.69 15 26 H 0.04 1.07 7.00 -51.93 -0.36 0.71 15 27 H 0.03 0.80 7.39 -51.93 -0.38 0.42 15 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 LS Contribution 241.85 15.07 3.64 3.64 Total: -1.00 -30.22 241.85 -7.34 -37.55 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -3.12 Total: -0.99 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -0.09 Total: -9.91 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.74 Total: -24.25 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -3.48 Total: -21.11 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.22 -7.34 -37.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095555666.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.421 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds