Wall clock time and date at job start Mon Mar 30 2020 07:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86801 * 119.99773 * 2 1 4 4 H 1.48500 * 109.47091 * 269.99587 * 3 2 1 5 5 H 1.48495 * 109.47476 * 30.00285 * 3 2 1 6 6 H 1.48509 * 109.46659 * 150.00225 * 3 2 1 7 7 C 1.38635 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 359.97438 * 7 2 1 9 9 O 1.34927 * 120.00063 * 180.02562 * 7 2 1 10 10 C 1.42896 * 116.99830 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46669 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47463 * 305.00081 * 11 10 9 13 13 O 1.42905 * 109.47030 * 65.00564 * 11 10 9 14 14 C 1.53000 * 109.46931 * 184.99882 * 11 10 9 15 15 N 1.46507 * 109.47335 * 175.00329 * 14 11 10 16 16 C 1.31872 * 119.13516 * 90.00129 * 15 14 11 17 17 C 1.38203 * 120.76276 * 180.27934 * 16 15 14 18 18 C 1.38658 * 119.15897 * 359.47460 * 17 16 15 19 19 C 1.38644 * 118.41944 * 0.49221 * 18 17 16 20 20 C 1.31868 * 119.13423 * 269.98193 * 15 14 11 21 21 H 0.97005 * 119.99393 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47186 * 60.00112 * 10 9 7 23 23 H 1.08998 * 109.47222 * 299.99741 * 10 9 7 24 24 H 0.96696 * 114.00444 * 59.99414 * 13 11 10 25 25 H 1.09001 * 109.47333 * 55.00183 * 14 11 10 26 26 H 1.09002 * 109.47106 * 295.00376 * 14 11 10 27 27 H 1.08002 * 119.61676 * 359.97438 * 16 15 14 28 28 H 1.07994 * 120.42094 * 179.69555 * 17 16 15 29 29 H 1.07994 * 120.78546 * 180.21924 * 18 17 16 30 30 H 1.08007 * 120.41669 * 179.72674 * 19 18 17 31 31 H 1.07999 * 119.61887 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4473 2.6527 0.7001 6 1 3.5474 1.4401 0.7001 7 6 2.0090 -1.2006 -0.0005 8 1 1.4689 -2.1359 -0.0005 9 8 3.3583 -1.2007 0.0000 10 6 4.0070 -2.4739 0.0000 11 6 5.5238 -2.2734 -0.0001 12 1 5.8068 -1.6414 -0.8418 13 8 5.9214 -1.6466 1.2211 14 6 6.2176 -3.6312 -0.1258 15 7 7.6640 -3.4313 -0.2458 16 6 8.4004 -3.3974 0.8476 17 6 9.7670 -3.2050 0.7739 18 6 10.3624 -3.0578 -0.4697 19 6 9.5557 -3.0995 -1.5966 20 6 8.1954 -3.2903 -1.4444 21 1 -0.4849 0.8401 0.0004 22 1 3.7144 -3.0307 -0.8903 23 1 3.7138 -3.0311 0.8897 24 1 5.7007 -2.1543 2.0139 25 1 5.8475 -4.1478 -1.0114 26 1 6.0060 -4.2308 0.7596 27 1 7.9294 -3.5166 1.8122 28 1 10.3641 -3.1734 1.6731 29 1 11.4284 -2.9097 -0.5581 30 1 9.9850 -2.9840 -2.5809 31 1 7.5602 -3.3244 -2.3172 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095563907.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:28 Heat of formation + Delta-G solvation = 60.342841 kcal Electronic energy + Delta-G solvation = -15022.598179 eV Core-core repulsion = 12388.779758 eV Total energy + Delta-G solvation = -2633.818421 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.63630 -39.71308 -37.52749 -36.85446 -34.43189 -33.06869 -32.34120 -28.68664 -27.02122 -26.25461 -24.84379 -23.38094 -20.58959 -19.63943 -18.91854 -18.85251 -18.53946 -17.73652 -17.58296 -16.87188 -16.60091 -16.31902 -15.51574 -14.90714 -14.62538 -14.50172 -14.40528 -14.09419 -13.37505 -13.12166 -12.88090 -12.35855 -12.13538 -11.85791 -11.54706 -10.96912 -10.82126 -10.37302 -9.19916 -6.95032 -4.71231 -2.22267 -1.75494 -0.39360 0.62784 1.65963 1.87382 2.09107 2.19054 2.34076 2.43784 2.50735 2.56963 2.65821 2.72779 2.80309 2.98724 3.07692 3.25518 3.39272 3.54819 3.60730 3.63082 3.84169 3.90704 3.97909 4.35965 4.50008 4.81924 4.94307 6.06806 6.84526 7.36935 8.40508 8.80664 10.15955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.386 4.386 8 H 0.082 0.918 9 O -0.316 6.316 10 C 0.057 3.943 11 C 0.092 3.908 12 H 0.119 0.881 13 O -0.544 6.544 14 C 0.012 3.988 15 N -0.325 5.325 16 C 0.134 3.866 17 C -0.123 4.123 18 C -0.006 4.006 19 C -0.122 4.122 20 C 0.120 3.880 21 H 0.277 0.723 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.380 0.620 25 H 0.142 0.858 26 H 0.135 0.865 27 H 0.202 0.798 28 H 0.183 0.817 29 H 0.173 0.827 30 H 0.183 0.817 31 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.086 -15.619 -1.376 35.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.463 4.463 8 H 0.099 0.901 9 O -0.232 6.232 10 C -0.022 4.022 11 C 0.031 3.969 12 H 0.137 0.863 13 O -0.349 6.349 14 C -0.107 4.107 15 N 0.020 4.980 16 C -0.009 4.009 17 C -0.141 4.141 18 C -0.031 4.031 19 C -0.141 4.141 20 C -0.022 4.022 21 H 0.087 0.913 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.229 0.771 25 H 0.160 0.840 26 H 0.153 0.847 27 H 0.219 0.781 28 H 0.200 0.800 29 H 0.191 0.809 30 H 0.200 0.800 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 31.948 -14.921 -1.752 35.304 hybrid contribution -0.100 0.083 0.305 0.331 sum 31.848 -14.838 -1.447 35.164 Atomic orbital electron populations 1.69649 1.05437 1.28169 1.50601 1.24329 0.94838 0.98492 0.96741 0.86186 0.79918 0.82171 0.78347 1.20585 1.21100 1.18955 1.20213 0.77322 0.95410 1.53398 0.90066 1.85270 1.21376 1.22376 1.94203 1.22452 0.88563 0.90519 1.00661 1.22467 0.95245 0.89102 0.90048 0.86283 1.86730 1.82432 1.50599 1.15137 1.24318 0.72971 1.03425 1.09992 1.42750 1.12776 1.36120 1.06368 1.23123 0.93293 0.91612 0.92837 1.22190 0.92954 0.97615 1.01366 1.22521 1.03460 0.85667 0.91486 1.22188 0.91218 0.97675 1.02989 1.23195 0.97399 0.92202 0.89405 0.91281 0.93631 0.93988 0.77144 0.83998 0.84700 0.78069 0.80001 0.80902 0.79968 0.77813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -18.92 13.97 55.48 0.77 -18.15 16 2 C 0.06 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.91 13.86 28.62 -169.99 -4.86 8.99 16 4 H -0.28 -4.20 7.11 56.52 0.40 -3.80 16 5 H -0.29 -4.48 7.11 56.52 0.40 -4.08 16 6 H -0.27 -3.87 7.11 56.52 0.40 -3.46 16 7 C -0.39 -6.53 10.35 30.88 0.32 -6.21 16 8 H 0.08 1.47 8.00 -52.49 -0.42 1.05 16 9 O -0.32 -3.61 8.57 -21.36 -0.18 -3.80 16 10 C 0.06 0.10 5.65 37.16 0.21 0.31 16 11 C 0.09 -0.49 3.49 -26.73 -0.09 -0.58 16 12 H 0.12 -0.55 8.14 -51.93 -0.42 -0.97 16 13 O -0.54 2.06 12.70 -40.09 -0.51 1.55 16 14 C 0.01 -0.15 5.18 -4.04 -0.02 -0.18 16 15 N -0.32 4.78 2.40 -117.62 -0.28 4.50 16 16 C 0.13 -2.09 9.62 -17.55 -0.17 -2.26 16 17 C -0.12 1.98 10.11 -39.44 -0.40 1.58 16 18 C -0.01 0.10 10.18 -39.28 -0.40 -0.30 16 19 C -0.12 1.98 10.11 -39.44 -0.40 1.58 16 20 C 0.12 -1.88 10.20 -17.55 -0.18 -2.06 16 21 H 0.28 5.44 8.31 -40.82 -0.34 5.10 16 22 H 0.05 0.04 8.14 -51.92 -0.42 -0.39 16 23 H 0.04 0.04 8.14 -51.93 -0.42 -0.38 16 24 H 0.38 -2.90 9.05 45.56 0.41 -2.48 16 25 H 0.14 -2.05 7.95 -51.93 -0.41 -2.46 16 26 H 0.13 -2.00 7.95 -51.93 -0.41 -2.41 16 27 H 0.20 -3.56 7.96 -52.49 -0.42 -3.98 16 28 H 0.18 -3.21 8.06 -52.49 -0.42 -3.63 16 29 H 0.17 -3.06 8.06 -52.49 -0.42 -3.49 16 30 H 0.18 -3.23 8.06 -52.48 -0.42 -3.66 16 31 H 0.21 -3.62 7.96 -52.49 -0.42 -4.04 16 LS Contribution 273.72 15.07 4.12 4.12 Total: 0.00 -37.49 273.72 -5.51 -42.99 By element: Atomic # 1 Polarization: -29.74 SS G_CDS: -3.34 Total: -33.08 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -1.23 Total: -7.13 kcal Atomic # 7 Polarization: -14.14 SS G_CDS: 0.49 Total: -13.65 kcal Atomic # 8 Polarization: -1.56 SS G_CDS: -0.69 Total: -2.25 kcal Atomic # 14 Polarization: 13.86 SS G_CDS: -4.86 Total: 8.99 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -37.49 -5.51 -42.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095563907.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.334 kcal (2) G-P(sol) polarization free energy of solvation -37.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds