Wall clock time and date at job start Mon Mar 30 2020 07:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86801 * 119.99773 * 2 1 4 4 H 1.48500 * 109.47091 * 269.99587 * 3 2 1 5 5 H 1.48495 * 109.47476 * 30.00285 * 3 2 1 6 6 H 1.48509 * 109.46659 * 150.00225 * 3 2 1 7 7 C 1.38635 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 359.97438 * 7 2 1 9 9 O 1.34927 * 120.00063 * 180.02562 * 7 2 1 10 10 C 1.42896 * 116.99830 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46669 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47463 * 305.00081 * 11 10 9 13 13 O 1.42905 * 109.47030 * 65.00564 * 11 10 9 14 14 C 1.53000 * 109.46931 * 184.99882 * 11 10 9 15 15 N 1.46507 * 109.47335 * 175.00329 * 14 11 10 16 16 C 1.31872 * 119.13516 * 90.00129 * 15 14 11 17 17 C 1.38203 * 120.76276 * 180.27934 * 16 15 14 18 18 C 1.38658 * 119.15897 * 359.47460 * 17 16 15 19 19 C 1.38644 * 118.41944 * 0.49221 * 18 17 16 20 20 C 1.31868 * 119.13423 * 269.98193 * 15 14 11 21 21 H 0.97005 * 119.99393 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47186 * 60.00112 * 10 9 7 23 23 H 1.08998 * 109.47222 * 299.99741 * 10 9 7 24 24 H 0.96696 * 114.00444 * 59.99414 * 13 11 10 25 25 H 1.09001 * 109.47333 * 55.00183 * 14 11 10 26 26 H 1.09002 * 109.47106 * 295.00376 * 14 11 10 27 27 H 1.08002 * 119.61676 * 359.97438 * 16 15 14 28 28 H 1.07994 * 120.42094 * 179.69555 * 17 16 15 29 29 H 1.07994 * 120.78546 * 180.21924 * 18 17 16 30 30 H 1.08007 * 120.41669 * 179.72674 * 19 18 17 31 31 H 1.07999 * 119.61887 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4473 2.6527 0.7001 6 1 3.5474 1.4401 0.7001 7 6 2.0090 -1.2006 -0.0005 8 1 1.4689 -2.1359 -0.0005 9 8 3.3583 -1.2007 0.0000 10 6 4.0070 -2.4739 0.0000 11 6 5.5238 -2.2734 -0.0001 12 1 5.8068 -1.6414 -0.8418 13 8 5.9214 -1.6466 1.2211 14 6 6.2176 -3.6312 -0.1258 15 7 7.6640 -3.4313 -0.2458 16 6 8.4004 -3.3974 0.8476 17 6 9.7670 -3.2050 0.7739 18 6 10.3624 -3.0578 -0.4697 19 6 9.5557 -3.0995 -1.5966 20 6 8.1954 -3.2903 -1.4444 21 1 -0.4849 0.8401 0.0004 22 1 3.7144 -3.0307 -0.8903 23 1 3.7138 -3.0311 0.8897 24 1 5.7007 -2.1543 2.0139 25 1 5.8475 -4.1478 -1.0114 26 1 6.0060 -4.2308 0.7596 27 1 7.9294 -3.5166 1.8122 28 1 10.3641 -3.1734 1.6731 29 1 11.4284 -2.9097 -0.5581 30 1 9.9850 -2.9840 -2.5809 31 1 7.5602 -3.3244 -2.3172 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095563907.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:28 Heat of formation + Delta-G solvation = 31.739983 kcal Electronic energy + Delta-G solvation = -15023.838492 eV Core-core repulsion = 12388.779758 eV Total energy + Delta-G solvation = -2635.058734 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.37783 -39.46166 -37.75874 -36.02313 -34.18836 -33.09285 -31.99148 -28.38341 -26.20034 -25.69754 -24.71565 -23.11685 -19.94198 -19.53121 -18.36746 -18.01948 -17.52824 -17.35938 -17.06964 -16.72155 -15.87154 -15.64578 -15.40657 -15.10175 -14.88785 -14.11568 -13.89892 -13.37311 -13.09537 -13.07237 -12.92516 -12.51657 -12.11275 -11.84308 -11.64658 -11.48045 -11.09637 -10.78470 -10.46806 -8.34011 -6.05512 -0.92775 -0.40948 0.79734 1.35675 1.39078 1.53931 1.94536 2.35477 2.77192 3.00253 3.05722 3.11201 3.29486 3.46047 3.58559 3.66672 3.79849 3.89426 4.01236 4.14141 4.32796 4.37596 4.53649 4.69759 4.77372 4.84405 4.92094 5.22835 5.24193 5.49769 6.04887 6.64873 7.06003 7.72489 8.80992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.014 4.014 3 Si 0.972 3.028 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.254 1.254 7 C -0.354 4.354 8 H 0.055 0.945 9 O -0.343 6.343 10 C 0.034 3.966 11 C 0.104 3.896 12 H 0.109 0.891 13 O -0.567 6.567 14 C 0.033 3.967 15 N -0.330 5.330 16 C 0.125 3.875 17 C -0.130 4.130 18 C -0.011 4.011 19 C -0.129 4.129 20 C 0.111 3.889 21 H 0.272 0.728 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.395 0.605 25 H 0.163 0.837 26 H 0.161 0.839 27 H 0.220 0.780 28 H 0.194 0.806 29 H 0.185 0.815 30 H 0.195 0.805 31 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.054 -16.640 -1.432 38.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.208 4.208 3 Si 0.797 3.203 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.177 1.177 7 C -0.432 4.432 8 H 0.073 0.927 9 O -0.260 6.260 10 C -0.044 4.044 11 C 0.044 3.956 12 H 0.126 0.874 13 O -0.375 6.375 14 C -0.086 4.086 15 N 0.014 4.986 16 C -0.017 4.017 17 C -0.148 4.148 18 C -0.036 4.036 19 C -0.147 4.147 20 C -0.030 4.030 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.246 0.754 25 H 0.181 0.819 26 H 0.178 0.822 27 H 0.236 0.764 28 H 0.212 0.788 29 H 0.202 0.798 30 H 0.212 0.788 31 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 34.980 -15.979 -1.804 38.499 hybrid contribution -0.863 0.223 0.325 0.948 sum 34.117 -15.756 -1.480 37.609 Atomic orbital electron populations 1.69791 1.07245 1.28484 1.54526 1.25192 0.95557 1.02138 0.97929 0.85162 0.78761 0.78058 0.78303 1.20152 1.22211 1.17734 1.20212 0.79960 0.93878 1.49163 0.92679 1.85170 1.18197 1.28318 1.94267 1.23093 0.92843 0.86974 1.01440 1.22172 0.90743 0.93238 0.89459 0.87359 1.86685 1.82312 1.52272 1.16243 1.23907 0.73730 0.98537 1.12452 1.42524 1.11747 1.37424 1.06921 1.23526 0.93652 0.91171 0.93331 1.22423 0.93006 0.97463 1.01930 1.22795 1.04226 0.85019 0.91596 1.22421 0.91158 0.97488 1.03640 1.23589 0.97984 0.91727 0.89674 0.91857 0.92489 0.93105 0.75430 0.81941 0.82164 0.76390 0.78843 0.79793 0.78797 0.76210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -43.24 13.97 21.61 0.30 -42.93 16 2 C -0.01 -0.57 5.49 84.82 0.47 -0.10 16 3 Si 0.97 29.68 28.62 68.60 1.96 31.65 16 4 H -0.28 -8.05 7.11 99.48 0.71 -7.34 16 5 H -0.30 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.25 -7.06 7.11 99.48 0.71 -6.35 16 7 C -0.35 -12.58 10.35 67.91 0.70 -11.88 16 8 H 0.06 2.15 8.00 -2.91 -0.02 2.13 16 9 O -0.34 -8.04 8.57 -77.31 -0.66 -8.71 16 10 C 0.03 0.12 5.65 71.98 0.41 0.52 16 11 C 0.10 -1.21 3.49 30.59 0.11 -1.10 16 12 H 0.11 -1.05 8.14 -2.39 -0.02 -1.07 16 13 O -0.57 4.80 12.70 -144.34 -1.83 2.96 16 14 C 0.03 -0.92 5.18 86.38 0.45 -0.47 16 15 N -0.33 10.26 2.40 -526.03 -1.26 8.99 16 16 C 0.12 -4.06 9.62 84.68 0.81 -3.25 16 17 C -0.13 4.31 10.11 22.36 0.23 4.54 16 18 C -0.01 0.37 10.18 22.47 0.23 0.60 16 19 C -0.13 4.28 10.11 22.36 0.23 4.51 16 20 C 0.11 -3.63 10.20 84.68 0.86 -2.77 16 21 H 0.27 11.61 8.31 -92.70 -0.77 10.84 16 22 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 23 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 24 H 0.39 -6.43 9.05 -74.06 -0.67 -7.10 16 25 H 0.16 -5.13 7.95 -2.39 -0.02 -5.15 16 26 H 0.16 -5.22 7.95 -2.39 -0.02 -5.23 16 27 H 0.22 -8.09 7.96 -2.91 -0.02 -8.12 16 28 H 0.19 -7.01 8.06 -2.91 -0.02 -7.03 16 29 H 0.18 -6.65 8.06 -2.91 -0.02 -6.67 16 30 H 0.19 -7.05 8.06 -2.91 -0.02 -7.07 16 31 H 0.22 -8.13 7.96 -2.91 -0.02 -8.16 16 Total: 0.00 -85.71 273.72 3.44 -82.27 By element: Atomic # 1 Polarization: -65.27 SS G_CDS: 0.44 Total: -64.83 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.49 Total: -9.40 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: -0.96 Total: -33.94 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -2.50 Total: -5.74 kcal Atomic # 14 Polarization: 29.68 SS G_CDS: 1.96 Total: 31.65 kcal Total: -85.71 3.44 -82.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095563907.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.012 kcal (2) G-P(sol) polarization free energy of solvation -85.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds