Wall clock time and date at job start Mon Mar 30 2020 07:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86795 * 120.00017 * 2 1 4 4 H 1.48500 * 109.47100 * 270.00059 * 3 2 1 5 5 H 1.48506 * 109.47239 * 29.99956 * 3 2 1 6 6 H 1.48496 * 109.47356 * 150.00110 * 3 2 1 7 7 C 1.38642 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99689 * 359.97438 * 7 2 1 9 9 O 1.34923 * 119.99951 * 179.97438 * 7 2 1 10 10 C 1.42893 * 117.00093 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47431 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46591 * 54.99927 * 11 10 9 13 13 O 1.42901 * 109.46876 * 295.00419 * 11 10 9 14 14 C 1.52996 * 109.47199 * 174.99996 * 11 10 9 15 15 N 1.46505 * 109.46928 * 185.00098 * 14 11 10 16 16 C 1.31861 * 119.13834 * 90.00401 * 15 14 11 17 17 C 1.38204 * 120.76572 * 180.02562 * 16 15 14 18 18 C 1.38653 * 119.16231 * 359.97389 * 17 16 15 19 19 C 1.38653 * 118.41885 * 0.25522 * 18 17 16 20 20 C 1.31874 * 119.13602 * 270.01975 * 15 14 11 21 21 H 0.97003 * 119.99611 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47021 * 60.00141 * 10 9 7 23 23 H 1.09004 * 109.47143 * 300.00134 * 10 9 7 24 24 H 0.96700 * 113.99614 * 299.99514 * 13 11 10 25 25 H 1.09000 * 109.47267 * 65.00263 * 14 11 10 26 26 H 1.08996 * 109.47518 * 304.99815 * 14 11 10 27 27 H 1.08006 * 119.61956 * 0.02562 * 16 15 14 28 28 H 1.07997 * 120.41927 * 179.97438 * 17 16 15 29 29 H 1.08002 * 120.78754 * 179.97438 * 18 17 16 30 30 H 1.07999 * 120.41543 * 179.72693 * 19 18 17 31 31 H 1.07999 * 119.61599 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4473 2.6527 0.7001 6 1 3.5474 1.4402 0.7000 7 6 2.0090 -1.2007 -0.0005 8 1 1.4690 -2.1360 -0.0005 9 8 3.3583 -1.2007 -0.0011 10 6 4.0070 -2.4739 -0.0010 11 6 5.5238 -2.2735 -0.0010 12 1 5.8067 -1.6415 0.8408 13 8 5.9214 -1.6466 -1.2221 14 6 6.2176 -3.6313 0.1247 15 7 7.6640 -3.4313 0.2449 16 6 8.1953 -3.2900 1.4434 17 6 9.5556 -3.0991 1.5957 18 6 10.3624 -3.0577 0.4688 19 6 9.7671 -3.2052 -0.7747 20 6 8.4004 -3.3970 -0.8486 21 1 -0.4850 0.8401 0.0004 22 1 3.7138 -3.0311 -0.8908 23 1 3.7144 -3.0307 0.8892 24 1 5.7007 -2.1543 -2.0149 25 1 6.0061 -4.2308 -0.7606 26 1 5.8476 -4.1478 1.0103 27 1 7.5601 -3.3239 2.3162 28 1 9.9848 -2.9836 2.5800 29 1 11.4285 -2.9095 0.5573 30 1 10.3643 -3.1738 -1.6740 31 1 7.9295 -3.5158 -1.8132 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095563908.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:30 Heat of formation + Delta-G solvation = 60.260358 kcal Electronic energy + Delta-G solvation = -15022.151431 eV Core-core repulsion = 12388.329433 eV Total energy + Delta-G solvation = -2633.821998 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.63704 -39.71578 -37.52849 -36.85730 -34.43183 -33.07005 -32.34283 -28.68727 -27.02135 -26.25503 -24.84474 -23.38208 -20.59018 -19.63959 -18.91983 -18.85293 -18.54100 -17.73742 -17.58363 -16.87304 -16.60001 -16.32328 -15.51838 -14.90619 -14.62892 -14.50276 -14.40481 -14.09520 -13.37694 -13.12342 -12.88184 -12.36290 -12.13544 -11.85693 -11.55919 -10.94180 -10.85170 -10.37462 -9.19959 -6.95173 -4.71315 -2.22263 -1.75477 -0.39361 0.62791 1.65958 1.87362 2.09119 2.19054 2.34018 2.43778 2.50485 2.58139 2.65483 2.70806 2.80258 2.98732 3.07690 3.25450 3.39249 3.54829 3.60566 3.62729 3.84352 3.90701 3.97971 4.36110 4.49507 4.82174 4.94110 6.06340 6.84448 7.36805 8.40348 8.80595 10.15838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.386 4.386 8 H 0.082 0.918 9 O -0.316 6.316 10 C 0.057 3.943 11 C 0.092 3.908 12 H 0.120 0.880 13 O -0.544 6.544 14 C 0.012 3.988 15 N -0.325 5.325 16 C 0.120 3.880 17 C -0.122 4.122 18 C -0.006 4.006 19 C -0.123 4.123 20 C 0.134 3.866 21 H 0.277 0.723 22 H 0.042 0.958 23 H 0.046 0.954 24 H 0.380 0.620 25 H 0.135 0.865 26 H 0.142 0.858 27 H 0.205 0.795 28 H 0.183 0.817 29 H 0.174 0.826 30 H 0.183 0.817 31 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.064 -15.618 1.414 35.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.463 4.463 8 H 0.099 0.901 9 O -0.232 6.232 10 C -0.022 4.022 11 C 0.031 3.969 12 H 0.137 0.863 13 O -0.349 6.349 14 C -0.107 4.107 15 N 0.020 4.980 16 C -0.022 4.022 17 C -0.141 4.141 18 C -0.031 4.031 19 C -0.141 4.141 20 C -0.009 4.009 21 H 0.087 0.913 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.229 0.771 25 H 0.153 0.847 26 H 0.160 0.840 27 H 0.222 0.778 28 H 0.200 0.800 29 H 0.191 0.809 30 H 0.200 0.800 31 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 31.923 -14.921 1.797 35.284 hybrid contribution -0.088 0.081 -0.339 0.359 sum 31.836 -14.839 1.459 35.155 Atomic orbital electron populations 1.69650 1.05425 1.28167 1.50608 1.24333 0.94844 0.98497 0.96752 0.86138 0.79481 0.82133 0.78447 1.20450 1.21179 1.19431 1.20215 0.77320 0.95413 1.53391 0.90058 1.85268 1.21378 1.22384 1.94203 1.22450 0.88561 0.90515 1.00664 1.22468 0.95249 0.89111 0.90038 0.86276 1.86727 1.82455 1.50602 1.15151 1.24314 0.72971 1.03415 1.09993 1.42749 1.12777 1.36121 1.06367 1.23194 0.97403 0.92191 0.89411 1.22189 0.91215 0.97675 1.02989 1.22524 1.03461 0.85661 0.91486 1.22188 0.92953 0.97623 1.01365 1.23122 0.93293 0.91614 0.92837 0.91278 0.93978 0.93634 0.77130 0.84693 0.84000 0.77816 0.79969 0.80899 0.79998 0.78068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -18.91 13.97 55.48 0.77 -18.13 16 2 C 0.06 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.91 13.93 28.62 -169.99 -4.86 9.06 16 4 H -0.28 -4.27 7.11 56.52 0.40 -3.87 16 5 H -0.29 -4.46 7.11 56.52 0.40 -4.06 16 6 H -0.27 -3.86 7.11 56.52 0.40 -3.46 16 7 C -0.39 -6.53 10.35 30.88 0.32 -6.21 16 8 H 0.08 1.47 8.00 -52.49 -0.42 1.05 16 9 O -0.32 -3.62 8.57 -21.35 -0.18 -3.80 16 10 C 0.06 0.10 5.65 37.16 0.21 0.31 16 11 C 0.09 -0.49 3.48 -26.73 -0.09 -0.58 16 12 H 0.12 -0.53 8.14 -51.93 -0.42 -0.95 16 13 O -0.54 2.12 12.70 -40.09 -0.51 1.61 16 14 C 0.01 -0.16 5.18 -4.04 -0.02 -0.18 16 15 N -0.32 4.78 2.40 -117.63 -0.28 4.50 16 16 C 0.12 -1.88 10.20 -17.55 -0.18 -2.06 16 17 C -0.12 1.98 10.11 -39.44 -0.40 1.58 16 18 C -0.01 0.10 10.18 -39.28 -0.40 -0.30 16 19 C -0.12 1.98 10.11 -39.44 -0.40 1.58 16 20 C 0.13 -2.09 9.62 -17.55 -0.17 -2.26 16 21 H 0.28 5.44 8.31 -40.82 -0.34 5.10 16 22 H 0.04 0.04 8.14 -51.93 -0.42 -0.38 16 23 H 0.05 0.04 8.14 -51.93 -0.42 -0.38 16 24 H 0.38 -2.95 9.05 45.56 0.41 -2.53 16 25 H 0.14 -2.00 7.95 -51.93 -0.41 -2.42 16 26 H 0.14 -2.05 7.95 -51.93 -0.41 -2.46 16 27 H 0.21 -3.61 7.96 -52.48 -0.42 -4.03 16 28 H 0.18 -3.23 8.06 -52.49 -0.42 -3.65 16 29 H 0.17 -3.06 8.06 -52.49 -0.42 -3.48 16 30 H 0.18 -3.21 8.06 -52.49 -0.42 -3.64 16 31 H 0.20 -3.57 7.96 -52.49 -0.42 -3.98 16 LS Contribution 273.72 15.07 4.12 4.12 Total: 0.00 -37.42 273.72 -5.51 -42.92 By element: Atomic # 1 Polarization: -29.81 SS G_CDS: -3.34 Total: -33.15 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -1.23 Total: -7.13 kcal Atomic # 7 Polarization: -14.13 SS G_CDS: 0.49 Total: -13.64 kcal Atomic # 8 Polarization: -1.50 SS G_CDS: -0.69 Total: -2.19 kcal Atomic # 14 Polarization: 13.93 SS G_CDS: -4.86 Total: 9.06 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -37.42 -5.51 -42.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095563908.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.183 kcal (2) G-P(sol) polarization free energy of solvation -37.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds