Wall clock time and date at job start Mon Mar 30 2020 07:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86795 * 120.00017 * 2 1 4 4 H 1.48500 * 109.47100 * 270.00059 * 3 2 1 5 5 H 1.48506 * 109.47239 * 29.99956 * 3 2 1 6 6 H 1.48496 * 109.47356 * 150.00110 * 3 2 1 7 7 C 1.38642 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99689 * 359.97438 * 7 2 1 9 9 O 1.34923 * 119.99951 * 179.97438 * 7 2 1 10 10 C 1.42893 * 117.00093 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47431 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46591 * 54.99927 * 11 10 9 13 13 O 1.42901 * 109.46876 * 295.00419 * 11 10 9 14 14 C 1.52996 * 109.47199 * 174.99996 * 11 10 9 15 15 N 1.46505 * 109.46928 * 185.00098 * 14 11 10 16 16 C 1.31861 * 119.13834 * 90.00401 * 15 14 11 17 17 C 1.38204 * 120.76572 * 180.02562 * 16 15 14 18 18 C 1.38653 * 119.16231 * 359.97389 * 17 16 15 19 19 C 1.38653 * 118.41885 * 0.25522 * 18 17 16 20 20 C 1.31874 * 119.13602 * 270.01975 * 15 14 11 21 21 H 0.97003 * 119.99611 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47021 * 60.00141 * 10 9 7 23 23 H 1.09004 * 109.47143 * 300.00134 * 10 9 7 24 24 H 0.96700 * 113.99614 * 299.99514 * 13 11 10 25 25 H 1.09000 * 109.47267 * 65.00263 * 14 11 10 26 26 H 1.08996 * 109.47518 * 304.99815 * 14 11 10 27 27 H 1.08006 * 119.61956 * 0.02562 * 16 15 14 28 28 H 1.07997 * 120.41927 * 179.97438 * 17 16 15 29 29 H 1.08002 * 120.78754 * 179.97438 * 18 17 16 30 30 H 1.07999 * 120.41543 * 179.72693 * 19 18 17 31 31 H 1.07999 * 119.61599 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4473 2.6527 0.7001 6 1 3.5474 1.4402 0.7000 7 6 2.0090 -1.2007 -0.0005 8 1 1.4690 -2.1360 -0.0005 9 8 3.3583 -1.2007 -0.0011 10 6 4.0070 -2.4739 -0.0010 11 6 5.5238 -2.2735 -0.0010 12 1 5.8067 -1.6415 0.8408 13 8 5.9214 -1.6466 -1.2221 14 6 6.2176 -3.6313 0.1247 15 7 7.6640 -3.4313 0.2449 16 6 8.1953 -3.2900 1.4434 17 6 9.5556 -3.0991 1.5957 18 6 10.3624 -3.0577 0.4688 19 6 9.7671 -3.2052 -0.7747 20 6 8.4004 -3.3970 -0.8486 21 1 -0.4850 0.8401 0.0004 22 1 3.7138 -3.0311 -0.8908 23 1 3.7144 -3.0307 0.8892 24 1 5.7007 -2.1543 -2.0149 25 1 6.0061 -4.2308 -0.7606 26 1 5.8476 -4.1478 1.0103 27 1 7.5601 -3.3239 2.3162 28 1 9.9848 -2.9836 2.5800 29 1 11.4285 -2.9095 0.5573 30 1 10.3643 -3.1738 -1.6740 31 1 7.9295 -3.5158 -1.8132 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095563908.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:30 Heat of formation + Delta-G solvation = 31.719629 kcal Electronic energy + Delta-G solvation = -15023.389050 eV Core-core repulsion = 12388.329433 eV Total energy + Delta-G solvation = -2635.059617 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.107 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.37910 -39.46288 -37.76001 -36.02358 -34.18901 -33.09337 -31.99197 -28.38440 -26.20106 -25.69823 -24.71628 -23.11771 -19.94339 -19.53184 -18.36817 -18.02049 -17.52622 -17.35674 -17.07689 -16.72368 -15.87062 -15.64711 -15.40383 -15.10149 -14.89494 -14.11684 -13.89733 -13.37325 -13.09513 -13.07263 -12.93305 -12.51000 -12.13923 -11.82549 -11.64509 -11.48195 -11.10036 -10.78542 -10.46956 -8.34115 -6.05555 -0.92830 -0.40990 0.79684 1.37047 1.37921 1.52425 1.94486 2.35105 2.77201 3.00033 3.05839 3.11033 3.29356 3.45989 3.58513 3.66599 3.79796 3.89358 4.01142 4.14097 4.32697 4.37537 4.53602 4.69740 4.77307 4.84349 4.92051 5.22764 5.24163 5.49744 6.04831 6.65077 7.05877 7.72443 8.80914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.014 4.014 3 Si 0.974 3.026 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.254 1.254 7 C -0.354 4.354 8 H 0.056 0.944 9 O -0.343 6.343 10 C 0.034 3.966 11 C 0.104 3.896 12 H 0.108 0.892 13 O -0.567 6.567 14 C 0.033 3.967 15 N -0.330 5.330 16 C 0.111 3.889 17 C -0.129 4.129 18 C -0.011 4.011 19 C -0.130 4.130 20 C 0.125 3.875 21 H 0.272 0.728 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.395 0.605 25 H 0.161 0.839 26 H 0.163 0.837 27 H 0.221 0.779 28 H 0.195 0.805 29 H 0.185 0.815 30 H 0.195 0.805 31 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.045 -16.649 1.446 38.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.208 4.208 3 Si 0.800 3.200 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.177 1.177 7 C -0.432 4.432 8 H 0.073 0.927 9 O -0.260 6.260 10 C -0.043 4.043 11 C 0.044 3.956 12 H 0.125 0.875 13 O -0.375 6.375 14 C -0.086 4.086 15 N 0.014 4.986 16 C -0.030 4.030 17 C -0.147 4.147 18 C -0.036 4.036 19 C -0.148 4.148 20 C -0.017 4.017 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.246 0.754 25 H 0.179 0.821 26 H 0.180 0.820 27 H 0.238 0.762 28 H 0.212 0.788 29 H 0.202 0.798 30 H 0.212 0.788 31 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 34.970 -15.989 1.826 38.495 hybrid contribution -0.856 0.226 -0.357 0.955 sum 34.114 -15.763 1.469 37.609 Atomic orbital electron populations 1.69790 1.07235 1.28487 1.54517 1.25192 0.95559 1.02130 0.97941 0.85135 0.78629 0.78077 0.78209 1.20511 1.22114 1.17736 1.20214 0.79956 0.93882 1.49161 0.92664 1.85167 1.18203 1.28327 1.94267 1.23092 0.92836 0.86972 1.01449 1.22163 0.90748 0.93225 0.89458 0.87463 1.86683 1.82322 1.52252 1.16232 1.23904 0.73728 0.98531 1.12456 1.42522 1.11750 1.37423 1.06919 1.23584 0.97988 0.91745 0.89683 1.22420 0.91154 0.97493 1.03642 1.22798 1.04227 0.85014 0.91597 1.22423 0.93007 0.97459 1.01927 1.23529 0.93650 0.91154 0.93332 0.91848 0.93042 0.92536 0.75393 0.82124 0.81971 0.76240 0.78809 0.79788 0.78827 0.76363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -43.21 13.97 21.61 0.30 -42.91 16 2 C -0.01 -0.57 5.49 84.83 0.47 -0.11 16 3 Si 0.97 29.78 28.62 68.60 1.96 31.74 16 4 H -0.28 -8.38 7.11 99.48 0.71 -7.67 16 5 H -0.29 -9.23 7.11 99.48 0.71 -8.52 16 6 H -0.25 -6.88 7.11 99.48 0.71 -6.17 16 7 C -0.35 -12.58 10.35 67.92 0.70 -11.88 16 8 H 0.06 2.15 8.00 -2.91 -0.02 2.13 16 9 O -0.34 -8.05 8.57 -77.28 -0.66 -8.71 16 10 C 0.03 0.12 5.65 71.98 0.41 0.52 16 11 C 0.10 -1.21 3.48 30.59 0.11 -1.10 16 12 H 0.11 -1.02 8.14 -2.39 -0.02 -1.03 16 13 O -0.57 4.93 12.70 -144.34 -1.83 3.09 16 14 C 0.03 -0.92 5.18 86.38 0.45 -0.47 16 15 N -0.33 10.25 2.40 -526.05 -1.26 8.99 16 16 C 0.11 -3.62 10.20 84.68 0.86 -2.75 16 17 C -0.13 4.28 10.11 22.36 0.23 4.50 16 18 C -0.01 0.37 10.18 22.47 0.23 0.60 16 19 C -0.13 4.31 10.11 22.36 0.23 4.54 16 20 C 0.12 -4.07 9.62 84.68 0.81 -3.26 16 21 H 0.27 11.60 8.31 -92.71 -0.77 10.83 16 22 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 23 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 24 H 0.40 -6.55 9.05 -74.06 -0.67 -7.22 16 25 H 0.16 -5.24 7.95 -2.39 -0.02 -5.26 16 26 H 0.16 -5.11 7.95 -2.39 -0.02 -5.13 16 27 H 0.22 -8.09 7.96 -2.91 -0.02 -8.12 16 28 H 0.19 -7.03 8.06 -2.91 -0.02 -7.05 16 29 H 0.18 -6.65 8.06 -2.91 -0.02 -6.68 16 30 H 0.19 -7.02 8.06 -2.91 -0.02 -7.05 16 31 H 0.22 -8.12 7.96 -2.91 -0.02 -8.15 16 Total: 0.00 -85.59 273.72 3.44 -82.15 By element: Atomic # 1 Polarization: -65.39 SS G_CDS: 0.44 Total: -64.94 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.49 Total: -9.40 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: -0.96 Total: -33.92 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: -2.50 Total: -5.62 kcal Atomic # 14 Polarization: 29.78 SS G_CDS: 1.96 Total: 31.74 kcal Total: -85.59 3.44 -82.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095563908.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.869 kcal (2) G-P(sol) polarization free energy of solvation -85.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds