Wall clock time and date at job start Mon Mar 30 2020 07:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99616 * 2 1 4 4 H 1.48499 * 109.47563 * 270.00168 * 3 2 1 5 5 H 1.48504 * 109.47203 * 30.00410 * 3 2 1 6 6 H 1.48502 * 109.46838 * 150.00183 * 3 2 1 7 7 C 1.37871 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00422 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99958 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47054 * 179.97438 * 9 7 2 11 11 O 1.21404 * 120.00530 * 0.02562 * 10 9 7 12 12 C 1.41378 * 120.00015 * 179.97438 * 10 9 7 13 13 N 1.30412 * 119.99931 * 186.01034 * 12 10 9 14 14 N 1.40101 * 120.00094 * 7.30596 * 13 12 10 15 15 C 1.47093 * 125.56220 * 248.68335 * 14 13 12 16 16 C 1.54089 * 103.77353 * 180.02562 * 15 14 13 17 17 O 1.45705 * 104.00566 * 0.02562 * 16 15 14 18 18 C 1.33747 * 109.47708 * 359.73796 * 17 16 15 19 19 O 1.21471 * 123.06527 * 180.26490 * 18 17 16 20 20 H 0.96998 * 120.00410 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47349 * 60.00152 * 9 7 2 22 22 H 1.09002 * 109.47012 * 299.99887 * 9 7 2 23 23 H 1.07998 * 119.99449 * 6.01559 * 12 10 9 24 24 H 1.09001 * 110.57123 * 298.57977 * 15 14 13 25 25 H 1.09001 * 110.56155 * 61.43300 * 15 14 13 26 26 H 1.08993 * 110.51992 * 118.63394 * 16 15 14 27 27 H 1.08998 * 110.52288 * 241.23828 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2305 -3.6445 -0.0027 11 8 3.4241 -3.4227 -0.0021 12 6 1.7593 -4.9774 -0.0034 13 7 2.6010 -5.9666 0.1140 14 7 3.9496 -5.7095 0.3937 15 6 5.0716 -5.9252 -0.5327 16 6 6.3061 -5.4851 0.2776 17 8 5.7560 -5.0725 1.5622 18 6 4.4271 -5.2229 1.5473 19 8 3.7183 -4.9468 2.4942 20 1 -0.4851 0.8400 0.0004 21 1 0.6248 -2.5564 -0.8920 22 1 0.6242 -2.5575 0.8880 23 1 0.7023 -5.1764 -0.1012 24 1 5.1474 -6.9782 -0.8038 25 1 4.9572 -5.3069 -1.4231 26 1 6.9951 -6.3195 0.4076 27 1 6.8069 -4.6500 -0.2123 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111469031.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:00 Heat of formation + Delta-G solvation = -65.780578 kcal Electronic energy + Delta-G solvation = -15655.319852 eV Core-core repulsion = 12801.117564 eV Total energy + Delta-G solvation = -2854.202288 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.71860 -40.83776 -38.47607 -37.35943 -35.16819 -34.24208 -31.56212 -30.33096 -27.43950 -25.05069 -24.57703 -22.87789 -20.71307 -18.92431 -18.57672 -18.20808 -17.90853 -17.25939 -16.55831 -16.18937 -15.91295 -15.73150 -15.11978 -14.87086 -14.38685 -14.06222 -13.39016 -13.36866 -13.18898 -12.88249 -12.65944 -12.53142 -12.16480 -11.83565 -11.73510 -11.52370 -10.79985 -10.65133 -9.68576 -8.28497 -6.36243 -0.53323 0.81092 1.35483 1.37427 1.48679 1.57614 1.71550 2.36277 2.38996 3.06901 3.19783 3.23324 3.78509 3.91394 4.03350 4.26772 4.43495 4.60861 4.65978 4.71900 5.11225 5.25340 5.64681 5.88787 6.04550 6.12162 6.49947 6.74393 6.97182 7.32253 8.82909 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.036875 B = 0.007871 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.142767 B = 3556.671483 C = 3906.107472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.280 1.280 7 C -0.545 4.545 8 H 0.049 0.951 9 C -0.024 4.024 10 C 0.349 3.651 11 O -0.470 6.470 12 C 0.083 3.917 13 N -0.161 5.161 14 N -0.502 5.502 15 C 0.080 3.920 16 C 0.042 3.958 17 O -0.343 6.343 18 C 0.648 3.352 19 O -0.577 6.577 20 H 0.268 0.732 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.249 0.751 24 H 0.136 0.864 25 H 0.092 0.908 26 H 0.154 0.846 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.212 -12.990 -5.284 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.783 3.217 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.205 1.205 7 C -0.583 4.583 8 H 0.068 0.932 9 C -0.061 4.061 10 C 0.227 3.773 11 O -0.342 6.342 12 C -0.127 4.127 13 N 0.029 4.971 14 N -0.337 5.337 15 C -0.041 4.041 16 C -0.032 4.032 17 O -0.251 6.251 18 C 0.403 3.597 19 O -0.465 6.465 20 H 0.077 0.923 21 H 0.086 0.914 22 H 0.069 0.931 23 H 0.265 0.735 24 H 0.154 0.846 25 H 0.110 0.890 26 H 0.172 0.828 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.777 -13.451 -4.628 16.715 hybrid contribution 0.056 1.995 0.108 1.998 sum 8.833 -11.456 -4.520 15.156 Atomic orbital electron populations 1.70002 1.06961 1.28112 1.50856 1.25707 0.95807 1.02535 0.94457 0.85559 0.78347 0.79122 0.78696 1.19166 1.20010 1.20549 1.21337 0.93402 0.91877 1.51664 0.93236 1.19537 0.95111 0.91739 0.99728 1.22888 0.90715 0.92861 0.70879 1.90408 1.20244 1.88677 1.34857 1.27437 1.04192 0.91583 0.89535 1.76255 0.86951 1.24192 1.09660 1.49016 1.03975 1.66328 1.14331 1.23158 0.81963 1.05761 0.93169 1.24834 0.95705 1.04477 0.78206 1.87222 1.18437 1.80121 1.39275 1.18599 0.81966 0.75441 0.83689 1.90962 1.58443 1.57186 1.39916 0.92316 0.91443 0.93143 0.73531 0.84626 0.89013 0.82814 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.13 13.29 21.45 0.28 -52.85 15 2 C 0.01 0.81 5.46 84.65 0.46 1.27 15 3 Si 0.96 45.13 29.54 68.60 2.03 47.15 15 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 15 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 6 H -0.28 -13.44 7.11 99.48 0.71 -12.74 15 7 C -0.54 -31.45 8.92 25.60 0.23 -31.23 15 8 H 0.05 3.01 6.75 -2.91 -0.02 2.99 15 9 C -0.02 -1.16 5.33 29.10 0.16 -1.01 15 10 C 0.35 14.89 6.63 26.46 0.18 15.06 15 11 O -0.47 -22.46 12.17 -3.32 -0.04 -22.50 15 12 C 0.08 2.62 10.96 85.68 0.94 3.56 15 13 N -0.16 -5.10 11.56 -56.23 -0.65 -5.75 15 14 N -0.50 -16.69 2.35 -590.50 -1.39 -18.07 15 15 C 0.08 1.66 7.71 86.63 0.67 2.33 15 16 C 0.04 0.78 8.23 72.35 0.60 1.37 15 17 O -0.34 -11.74 11.09 -47.09 -0.52 -12.26 15 18 C 0.65 26.57 6.72 129.91 0.87 27.44 15 19 O -0.58 -29.19 17.74 21.00 0.37 -28.81 15 20 H 0.27 14.55 8.31 -92.71 -0.77 13.78 15 21 H 0.07 3.18 8.14 -2.39 -0.02 3.16 15 22 H 0.05 2.58 8.14 -2.39 -0.02 2.56 15 23 H 0.25 4.99 8.06 -2.91 -0.02 4.97 15 24 H 0.14 1.70 8.14 -2.39 -0.02 1.68 15 25 H 0.09 1.88 8.14 -2.39 -0.02 1.86 15 26 H 0.15 1.39 8.14 -2.39 -0.02 1.37 15 27 H 0.12 1.91 8.14 -2.39 -0.02 1.89 15 Total: -1.00 -81.07 251.00 5.37 -75.70 By element: Atomic # 1 Polarization: -2.61 SS G_CDS: 1.19 Total: -1.41 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 4.10 Total: 18.81 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -1.75 Total: -76.67 kcal Atomic # 8 Polarization: -63.38 SS G_CDS: -0.19 Total: -63.57 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -81.07 5.37 -75.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111469031.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.915 kcal (2) G-P(sol) polarization free energy of solvation -81.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds