Wall clock time and date at job start Mon Mar 30 2020 07:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30560 * 1 3 3 Si 1.86795 * 120.00395 * 2 1 4 4 H 1.48501 * 109.47404 * 270.00463 * 3 2 1 5 5 H 1.48507 * 109.47222 * 30.00365 * 3 2 1 6 6 H 1.48500 * 109.47409 * 150.00370 * 3 2 1 7 7 C 1.40403 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00271 * 163.38433 * 7 2 1 9 9 C 1.40552 * 119.99964 * 343.38384 * 7 2 1 10 10 C 1.40850 * 121.47513 * 336.21313 * 9 7 2 11 11 C 1.38390 * 119.37053 * 180.02562 * 10 9 7 12 12 N 1.31258 * 122.59209 * 359.97438 * 11 10 9 13 13 C 1.33480 * 122.67809 * 0.02562 * 12 11 10 14 14 C 1.40899 * 121.21209 * 180.02562 * 13 12 11 15 15 C 1.36799 * 118.18948 * 179.97438 * 14 13 12 16 16 Br 1.89094 * 120.01124 * 179.97438 * 15 14 13 17 17 C 1.39225 * 119.97886 * 359.97438 * 15 14 13 18 18 N 1.31479 * 121.50889 * 0.02870 * 17 15 14 19 19 C 1.32703 * 121.28627 * 359.97384 * 18 17 15 20 20 H 0.97008 * 119.99508 * 359.97438 * 1 2 3 21 21 H 1.07993 * 120.31843 * 359.97438 * 10 9 7 22 22 H 1.08007 * 118.70121 * 180.25959 * 11 10 9 23 23 H 1.07999 * 120.91186 * 359.95740 * 14 13 12 24 24 H 1.07999 * 119.23969 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2397 1.6176 0.0000 4 1 2.4872 2.0464 -1.4001 5 1 1.4372 2.6527 0.7001 6 1 3.5373 1.4400 0.6999 7 6 2.0076 -1.2159 -0.0005 8 1 3.0537 -1.2354 -0.2680 9 6 1.3488 -2.4079 0.3470 10 6 0.1921 -2.4014 1.1506 11 6 -0.4215 -3.6009 1.4667 12 7 0.0311 -4.7590 1.0459 13 6 1.1186 -4.8728 0.2805 14 6 1.5770 -6.1322 -0.1543 15 6 2.6980 -6.1769 -0.9371 16 35 3.3587 -7.8397 -1.5488 17 6 3.3522 -4.9977 -1.2833 18 7 2.9189 -3.8258 -0.8740 19 6 1.8373 -3.7185 -0.1127 20 1 -0.4850 0.8402 0.0004 21 1 -0.2118 -1.4694 1.5173 22 1 -1.3103 -3.5831 2.0800 23 1 1.0578 -7.0376 0.1231 24 1 4.2364 -5.0470 -1.9016 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130609006.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:51 Heat of formation + Delta-G solvation = 45.041996 kcal Electronic energy + Delta-G solvation = -13301.293425 eV Core-core repulsion = 10838.984535 eV Total energy + Delta-G solvation = -2462.308890 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 277.975 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.66107 -36.54161 -34.72518 -32.69758 -30.88851 -29.88290 -28.43540 -26.39601 -23.53275 -22.50444 -21.02617 -18.22780 -17.17414 -16.35110 -15.91344 -15.06738 -13.87938 -13.75384 -13.68116 -12.78200 -12.60789 -12.38200 -11.93019 -11.58768 -11.55874 -11.29756 -10.74682 -10.65841 -10.29025 -10.05615 -9.86323 -9.34736 -9.09108 -7.89700 -7.80253 -7.71809 -7.30681 -4.90459 1.39911 1.72194 2.01977 2.65023 2.79795 2.86087 3.17715 3.52981 3.94262 4.37339 5.22548 5.42384 5.45502 5.56714 5.65586 6.05225 6.16993 6.46813 6.58062 6.73371 6.74442 7.15910 7.20459 7.41484 7.67001 8.06681 8.16293 8.27547 8.89289 9.37670 9.49247 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.035555 B = 0.005286 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.328904 B = 5295.915213 C = 6008.003445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.063 3.937 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.362 4.362 8 H 0.103 0.897 9 C 0.136 3.864 10 C -0.273 4.273 11 C 0.148 3.852 12 N -0.599 5.599 13 C 0.142 3.858 14 C -0.078 4.078 15 C -0.112 4.112 16 Br -0.071 7.071 17 C 0.052 3.948 18 N -0.418 5.418 19 C 0.028 3.972 20 H 0.295 0.705 21 H 0.131 0.869 22 H 0.125 0.875 23 H 0.134 0.866 24 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 -4.953 -1.621 6.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.163 4.163 3 Si 0.749 3.251 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.175 1.175 7 C -0.390 4.390 8 H 0.121 0.879 9 C 0.127 3.873 10 C -0.297 4.297 11 C -0.008 4.008 12 N -0.317 5.317 13 C 0.014 3.986 14 C -0.107 4.107 15 C -0.194 4.194 16 Br 0.013 6.987 17 C -0.118 4.118 18 N -0.126 5.126 19 C -0.106 4.106 20 H 0.107 0.893 21 H 0.149 0.851 22 H 0.143 0.857 23 H 0.152 0.848 24 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.939 -5.380 -1.827 6.914 hybrid contribution -0.002 1.004 0.063 1.006 sum 3.937 -4.376 -1.764 6.145 Atomic orbital electron populations 1.69706 1.08317 1.31230 1.26538 1.26418 0.95056 1.02797 0.92021 0.85964 0.80705 0.78337 0.80117 1.18563 1.19338 1.17549 1.20026 0.98621 0.89998 1.30371 0.87898 1.18612 0.91070 0.89126 0.88505 1.21953 1.02117 0.98341 1.07308 1.22073 0.96337 0.88182 0.94183 1.67487 1.15866 1.28074 1.20285 1.19220 0.92734 0.91906 0.94749 1.20874 0.95073 0.97435 0.97331 1.22380 1.00448 0.91577 1.05029 1.96553 1.87325 1.26300 1.88522 1.22337 1.00691 0.85998 1.02781 1.67481 1.11940 1.25269 1.07860 1.21008 0.94673 0.94841 1.00051 0.89287 0.85112 0.85736 0.84847 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -16.48 10.92 55.57 0.61 -15.87 14 2 C 0.06 1.38 5.21 -17.28 -0.09 1.29 14 3 Si 0.93 16.13 29.59 -169.99 -5.03 11.10 14 4 H -0.26 -4.52 7.11 56.52 0.40 -4.12 14 5 H -0.27 -4.49 7.11 56.52 0.40 -4.09 14 6 H -0.25 -4.40 7.11 56.52 0.40 -4.00 14 7 C -0.36 -8.75 8.87 -37.90 -0.34 -9.09 14 8 H 0.10 2.45 7.79 -52.49 -0.41 2.04 14 9 C 0.14 3.46 5.76 -104.39 -0.60 2.86 14 10 C -0.27 -6.63 8.81 -38.54 -0.34 -6.97 14 11 C 0.15 3.43 11.08 -17.74 -0.20 3.23 14 12 N -0.60 -14.57 10.26 -11.17 -0.11 -14.69 14 13 C 0.14 3.46 6.62 -84.88 -0.56 2.89 14 14 C -0.08 -1.65 9.85 -39.10 -0.39 -2.03 14 15 C -0.11 -2.15 6.20 -39.74 -0.25 -2.40 14 16 Br -0.07 -1.08 33.70 -68.01 -2.29 -3.38 14 17 C 0.05 1.05 10.91 -17.34 -0.19 0.86 14 18 N -0.42 -9.87 9.87 -9.36 -0.09 -9.97 14 19 C 0.03 0.71 6.79 -82.58 -0.56 0.15 14 20 H 0.30 5.80 8.29 -40.82 -0.34 5.46 14 21 H 0.13 3.12 6.20 -52.49 -0.33 2.79 14 22 H 0.13 2.46 8.06 -52.48 -0.42 2.04 14 23 H 0.13 2.57 8.06 -52.49 -0.42 2.15 14 24 H 0.15 2.52 8.06 -52.49 -0.42 2.09 14 LS Contribution 242.22 15.07 3.65 3.65 Total: -1.00 -26.08 242.22 -7.92 -33.99 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -1.14 Total: 4.36 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -3.51 Total: -9.21 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.40 Total: -40.53 kcal Atomic # 14 Polarization: 16.13 SS G_CDS: -5.03 Total: 11.10 kcal Atomic # 35 Polarization: -1.08 SS G_CDS: -2.29 Total: -3.38 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -26.08 -7.92 -33.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130609006.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.036 kcal (2) G-P(sol) polarization free energy of solvation -26.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds