Wall clock time and date at job start Mon Mar 30 2020 07:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86798 * 120.00076 * 2 1 4 4 H 1.48499 * 109.47298 * 269.99729 * 3 2 1 5 5 H 1.48505 * 109.47337 * 29.99824 * 3 2 1 6 6 H 1.48502 * 109.47425 * 149.99804 * 3 2 1 7 7 C 1.39911 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00485 * 195.83498 * 7 2 1 9 9 C 1.41267 * 119.99679 * 16.11423 * 7 2 1 10 10 C 1.40763 * 120.22160 * 26.19172 * 9 7 2 11 11 C 1.36569 * 119.90282 * 180.02562 * 10 9 7 12 12 Cl 1.73596 * 119.82664 * 179.97438 * 11 10 9 13 13 C 1.39101 * 120.35029 * 359.97438 * 11 10 9 14 14 F 1.35096 * 119.77825 * 179.97438 * 13 11 10 15 15 C 1.38848 * 120.44711 * 0.02562 * 13 11 10 16 16 C 1.37723 * 120.08823 * 359.71608 * 15 13 11 17 17 Br 1.89100 * 120.17413 * 180.27833 * 16 15 13 18 18 H 0.96996 * 119.99902 * 4.99287 * 1 2 3 19 19 H 1.08000 * 120.04760 * 359.97438 * 10 9 7 20 20 H 1.07995 * 119.95249 * 180.02562 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4400 2.6527 0.7000 6 1 3.5402 1.4402 0.7001 7 6 2.0082 -1.2116 0.0005 8 1 3.0575 -1.2293 0.2558 9 6 1.3435 -2.4112 -0.3385 10 6 0.2125 -2.3821 -1.1760 11 6 -0.4254 -3.5456 -1.4992 12 17 -1.8204 -3.5074 -2.5317 13 6 0.0367 -4.7612 -1.0054 14 9 -0.6035 -5.9051 -1.3320 15 6 1.1509 -4.8067 -0.1781 16 6 1.8113 -3.6450 0.1551 17 35 3.3337 -3.7050 1.2752 18 1 -0.4850 0.8368 -0.0731 19 1 -0.1507 -1.4410 -1.5618 20 1 1.5030 -5.7548 0.2004 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147142268.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:57 Heat of formation + Delta-G solvation = -56.485138 kcal Electronic energy + Delta-G solvation = -11875.021253 eV Core-core repulsion = 9250.123911 eV Total energy + Delta-G solvation = -2624.897342 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.43329 -39.57942 -37.36443 -35.64733 -32.72624 -31.57914 -29.93820 -27.08449 -23.54783 -22.68652 -19.56922 -18.15431 -17.52096 -16.81478 -16.32212 -16.13942 -14.87849 -14.66104 -14.14617 -14.04100 -13.72887 -13.10422 -12.99329 -12.84444 -12.57679 -12.03827 -11.79456 -11.65367 -11.22375 -11.03375 -10.72877 -9.61759 -9.32432 -8.82688 -6.55153 0.36439 0.60080 1.08287 1.32133 1.42413 1.47786 1.55833 2.17262 2.41240 3.29624 3.69941 4.09262 4.66615 4.74213 5.04458 5.05956 5.19644 5.49604 5.65705 5.89991 6.28394 6.57262 6.64154 8.11819 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.011342 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.081376 B = 2468.149420 C = 4226.163689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.041 3.959 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.253 1.253 7 C -0.447 4.447 8 H 0.101 0.899 9 C 0.107 3.893 10 C -0.141 4.141 11 C -0.028 4.028 12 Cl -0.080 7.080 13 C -0.054 4.054 14 F -0.154 7.154 15 C -0.066 4.066 16 C -0.195 4.195 17 Br -0.059 7.059 18 H 0.299 0.701 19 H 0.133 0.867 20 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.791 -1.004 0.652 3.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.177 1.177 7 C -0.474 4.474 8 H 0.119 0.881 9 C 0.101 3.899 10 C -0.162 4.162 11 C -0.056 4.056 12 Cl -0.051 7.051 13 C -0.076 4.076 14 F -0.133 7.133 15 C -0.087 4.087 16 C -0.275 4.275 17 Br 0.026 6.974 18 H 0.110 0.890 19 H 0.151 0.849 20 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.989 -0.909 1.055 4.225 hybrid contribution -0.599 0.357 -0.447 0.828 sum 3.390 -0.553 0.608 3.488 Atomic orbital electron populations 1.69806 1.09079 1.32209 1.31220 1.26838 0.95450 1.04778 0.90792 0.85169 0.79327 0.75465 0.79935 1.18268 1.19257 1.17680 1.20115 0.98512 0.90989 1.37805 0.88087 1.17644 0.90812 0.92348 0.89047 1.20879 0.98648 0.95854 1.00848 1.20682 0.92048 0.94397 0.98469 1.98278 1.41357 1.98934 1.66564 1.16856 0.99569 0.80409 1.10759 1.91339 1.81523 1.48157 1.92315 1.20582 0.93335 0.98250 0.96517 1.21462 1.01147 0.95381 1.09554 1.96317 1.36969 1.98890 1.65209 0.88963 0.84895 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.81 10.96 21.82 0.24 -36.58 14 2 C 0.04 1.78 5.16 85.24 0.44 2.22 14 3 Si 0.98 33.49 29.59 68.60 2.03 35.52 14 4 H -0.26 -8.57 7.11 99.48 0.71 -7.86 14 5 H -0.27 -8.83 7.11 99.48 0.71 -8.12 14 6 H -0.25 -8.49 7.11 99.48 0.71 -7.78 14 7 C -0.45 -20.89 8.44 23.42 0.20 -20.69 14 8 H 0.10 4.55 6.91 -2.91 -0.02 4.53 14 9 C 0.11 5.14 5.56 -21.27 -0.12 5.02 14 10 C -0.14 -6.78 8.39 22.50 0.19 -6.59 14 11 C -0.03 -1.28 6.28 22.09 0.14 -1.14 14 12 Cl -0.08 -3.19 28.58 -2.72 -0.08 -3.27 14 13 C -0.05 -2.41 7.30 22.62 0.17 -2.25 14 14 F -0.15 -6.57 16.82 44.97 0.76 -5.81 14 15 C -0.07 -2.79 9.75 22.29 0.22 -2.57 14 16 C -0.19 -8.64 6.28 22.80 0.14 -8.50 14 17 Br -0.06 -2.21 32.11 -20.37 -0.65 -2.87 14 18 H 0.30 12.36 8.30 -92.71 -0.77 11.59 14 19 H 0.13 6.53 6.21 -2.91 -0.02 6.51 14 20 H 0.14 5.23 8.06 -2.91 -0.02 5.20 14 Total: -1.00 -48.39 226.02 4.96 -43.43 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.29 Total: 4.07 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: 1.37 Total: -34.49 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.24 Total: -36.58 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 0.76 Total: -5.81 kcal Atomic # 14 Polarization: 33.49 SS G_CDS: 2.03 Total: 35.52 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.08 Total: -3.27 kcal Atomic # 35 Polarization: -2.21 SS G_CDS: -0.65 Total: -2.87 kcal Total: -48.39 4.96 -43.43 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147142268.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.055 kcal (2) G-P(sol) polarization free energy of solvation -48.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds