Wall clock time and date at job start Mon Mar 30 2020 07:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86807 * 119.99558 * 2 1 4 4 H 1.48501 * 109.46865 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46971 * 299.99759 * 3 2 1 6 6 H 1.48499 * 109.47327 * 59.99951 * 3 2 1 7 7 C 1.39925 * 120.00592 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00050 * 195.83926 * 7 2 1 9 9 C 1.41298 * 119.99614 * 16.12058 * 7 2 1 10 10 C 1.40748 * 120.22854 * 26.15267 * 9 7 2 11 11 C 1.37709 * 119.75146 * 180.02562 * 10 9 7 12 12 F 1.35100 * 119.88910 * 179.97438 * 11 10 9 13 13 C 1.39081 * 120.21045 * 359.97438 * 11 10 9 14 14 Cl 1.73604 * 119.76369 * 180.02562 * 13 11 10 15 15 C 1.38658 * 120.46362 * 0.02562 * 13 11 10 16 16 C 1.37734 * 120.24678 * 359.71991 * 15 13 11 17 17 Br 1.89097 * 120.11070 * 180.27513 * 16 15 13 18 18 H 0.96998 * 120.00210 * 4.97587 * 1 2 3 19 19 H 1.08002 * 120.12062 * 359.97438 * 10 9 7 20 20 H 1.08000 * 119.87628 * 179.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6179 0.0000 4 1 3.7024 1.3466 0.0006 5 1 1.8836 2.3965 -1.2125 6 1 1.8836 2.3966 1.2125 7 6 2.0082 -1.2117 0.0005 8 1 3.0575 -1.2293 0.2558 9 6 1.3435 -2.4115 -0.3387 10 6 0.2122 -2.3826 -1.1756 11 6 -0.4285 -3.5577 -1.4995 12 9 -1.5149 -3.5331 -2.3021 13 6 0.0394 -4.7697 -1.0029 14 17 -0.7768 -6.2443 -1.4192 15 6 1.1531 -4.8085 -0.1778 16 6 1.8115 -3.6451 0.1541 17 35 3.3345 -3.7032 1.2733 18 1 -0.4850 0.8368 -0.0729 19 1 -0.1525 -1.4421 -1.5616 20 1 1.5080 -5.7548 0.2028 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147791988.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:36 Heat of formation + Delta-G solvation = -47.885424 kcal Electronic energy + Delta-G solvation = -11870.806847 eV Core-core repulsion = 9246.282416 eV Total energy + Delta-G solvation = -2624.524431 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.90763 -37.75325 -35.61112 -33.93358 -30.88028 -29.95950 -27.98219 -25.54242 -21.82575 -20.86503 -17.95465 -16.26456 -15.50837 -15.07557 -14.91720 -14.65954 -13.37860 -12.98038 -12.61112 -12.24345 -11.88775 -11.53762 -11.36552 -11.00421 -10.85460 -10.52005 -10.28027 -9.94194 -9.59176 -9.35454 -9.07290 -7.86327 -7.54162 -7.15753 -4.84032 2.16376 2.34430 2.76499 2.89916 2.91600 2.97795 3.27531 3.67968 4.10338 5.05797 5.27038 5.87639 6.40620 6.44315 6.74539 6.84284 6.98284 7.16473 7.38185 7.68853 8.09069 8.30800 8.36950 9.74268 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.017631 B = 0.010087 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.695434 B = 2775.177027 C = 4287.337107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.425 4.425 8 H 0.100 0.900 9 C 0.147 3.853 10 C -0.184 4.184 11 C 0.132 3.868 12 F -0.151 7.151 13 C -0.192 4.192 14 Cl -0.105 7.105 15 C -0.018 4.018 16 C -0.196 4.196 17 Br -0.086 7.086 18 H 0.290 0.710 19 H 0.142 0.858 20 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 -2.202 0.827 4.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.452 4.452 8 H 0.118 0.882 9 C 0.141 3.859 10 C -0.206 4.206 11 C 0.111 3.889 12 F -0.129 7.129 13 C -0.221 4.221 14 Cl -0.077 7.077 15 C -0.039 4.039 16 C -0.276 4.276 17 Br -0.002 7.002 18 H 0.102 0.898 19 H 0.159 0.841 20 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.794 -2.179 1.262 4.554 hybrid contribution -0.433 0.578 -0.409 0.830 sum 3.361 -1.601 0.853 3.819 Atomic orbital electron populations 1.69795 1.07880 1.30800 1.30720 1.26103 0.94861 1.02164 0.91678 0.86108 0.81227 0.79813 0.79036 1.17708 1.19238 1.19439 1.19979 0.98336 0.90318 1.36582 0.88164 1.17199 0.89781 0.91245 0.87646 1.21209 1.00206 0.95715 1.03422 1.17389 0.85392 0.93288 0.92788 1.91392 1.52610 1.97419 1.71514 1.19997 1.02970 0.84604 1.14552 1.98244 1.79691 1.36302 1.93441 1.20155 0.92313 0.96848 0.94606 1.21328 1.00483 0.95677 1.10146 1.96324 1.38652 1.98948 1.66267 0.89827 0.84051 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.91 10.96 55.55 0.61 -17.30 14 2 C 0.07 1.65 5.16 -17.34 -0.09 1.57 14 3 Si 0.92 16.81 29.59 -169.99 -5.03 11.78 14 4 H -0.25 -4.64 7.11 56.52 0.40 -4.23 14 5 H -0.27 -4.83 7.11 56.52 0.40 -4.42 14 6 H -0.27 -4.92 7.11 56.52 0.40 -4.51 14 7 C -0.43 -10.04 8.44 -37.79 -0.32 -10.36 14 8 H 0.10 2.30 6.90 -52.49 -0.36 1.93 14 9 C 0.15 3.54 5.56 -106.80 -0.59 2.95 14 10 C -0.18 -4.47 8.65 -38.83 -0.34 -4.81 14 11 C 0.13 3.07 7.26 -39.46 -0.29 2.79 14 12 F -0.15 -3.42 16.82 2.25 0.04 -3.38 14 13 C -0.19 -4.22 6.35 -39.11 -0.25 -4.47 14 14 Cl -0.10 -2.03 28.59 -51.86 -1.48 -3.51 14 15 C -0.02 -0.39 9.54 -39.61 -0.38 -0.77 14 16 C -0.20 -4.40 6.28 -38.78 -0.24 -4.65 14 17 Br -0.09 -1.69 32.10 -68.01 -2.18 -3.87 14 18 H 0.29 6.07 8.30 -40.82 -0.34 5.73 14 19 H 0.14 3.49 6.22 -52.49 -0.33 3.17 14 20 H 0.12 2.26 8.06 -52.49 -0.42 1.83 14 LS Contribution 226.10 15.07 3.41 3.41 Total: -1.00 -23.74 226.10 -7.38 -31.13 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -0.25 Total: -0.50 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.49 Total: -17.75 kcal Atomic # 7 Polarization: -17.91 SS G_CDS: 0.61 Total: -17.30 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.04 Total: -3.38 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.03 Total: 11.78 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -1.48 Total: -3.51 kcal Atomic # 35 Polarization: -1.69 SS G_CDS: -2.18 Total: -3.87 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -23.74 -7.38 -31.13 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147791988.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.759 kcal (2) G-P(sol) polarization free energy of solvation -23.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds