Wall clock time and date at job start Mon Mar 30 2020 07:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42906 * 109.57089 * 359.56830 * 3 2 1 5 5 C 1.53115 * 109.52394 * 119.72790 * 3 2 1 6 6 C 1.53036 * 109.27887 * 62.24860 * 5 3 2 7 7 H 1.08998 * 109.46461 * 299.16610 * 6 5 3 8 8 C 1.52998 * 109.46537 * 179.19391 * 6 5 3 9 9 N 1.46855 * 109.52070 * 59.17779 * 6 5 3 10 10 C 1.46848 * 111.19771 * 298.25655 * 9 6 5 11 11 C 1.53041 * 109.52158 * 61.74407 * 10 9 6 12 12 C 1.53003 * 109.53605 * 60.77921 * 11 10 9 13 13 C 1.53001 * 109.50223 * 180.87494 * 11 10 9 14 14 C 1.50697 * 109.46995 * 299.80512 * 13 11 10 15 15 H 1.07991 * 120.00449 * 359.72153 * 14 13 11 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 13 11 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48498 * 109.47416 * 59.99812 * 18 16 14 20 20 H 1.48508 * 109.46609 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46903 * 299.99397 * 18 16 14 22 22 H 4.38654 * 5.43549 * 180.02562 * 4 1 2 23 23 H 0.96700 * 113.99975 * 59.84860 * 4 3 2 24 24 H 1.08998 * 109.50432 * 182.19190 * 5 3 2 25 25 H 1.09002 * 109.50093 * 302.31126 * 5 3 2 26 26 H 1.08999 * 109.46957 * 59.99974 * 8 6 5 27 27 H 1.08992 * 109.47248 * 180.02562 * 8 6 5 28 28 H 1.09005 * 109.47069 * 300.00682 * 8 6 5 29 29 H 1.00898 * 110.99660 * 62.35355 * 9 6 5 30 30 H 1.08995 * 109.46489 * 301.72836 * 10 9 6 31 31 H 1.09005 * 109.45805 * 181.75291 * 10 9 6 32 32 H 1.08998 * 109.46956 * 180.09546 * 12 11 10 33 33 H 1.09001 * 109.47033 * 300.09640 * 12 11 10 34 34 H 1.08996 * 109.47437 * 60.09668 * 12 11 10 35 35 H 1.08998 * 109.47065 * 179.79938 * 13 11 10 36 36 H 1.09001 * 109.46892 * 59.80202 * 13 11 10 37 37 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1254 -1.3456 0.0101 5 6 3.1575 0.7165 -1.2532 6 6 2.6917 2.1741 -1.2280 7 1 1.6022 2.2072 -1.2226 8 6 3.2174 2.8988 -2.4687 9 7 3.2072 2.8332 -0.0212 10 6 2.6916 2.1922 1.1953 11 6 3.1573 0.7352 1.2424 12 6 4.6864 0.6875 1.2709 13 6 2.6018 0.0617 2.4989 14 6 3.1055 0.7853 3.7210 15 1 3.7603 1.6372 3.6127 16 6 2.7345 0.3564 4.9779 17 7 1.9367 -0.6807 5.1098 18 14 3.3650 1.2487 6.4930 19 1 2.9233 2.6659 6.4527 20 1 2.8247 0.5957 7.7125 21 1 4.8488 1.1931 6.5185 22 1 -1.0498 -0.0004 -0.0002 23 1 2.8393 -1.8707 -0.7498 24 1 4.2467 0.6828 -1.2726 25 1 2.7616 0.2233 -2.1410 26 1 2.8341 2.4102 -3.3645 27 1 2.8861 3.9370 -2.4507 28 1 4.3069 2.8653 -2.4747 29 1 4.2161 2.8498 -0.0213 30 1 1.6022 2.2252 1.1893 31 1 3.0662 2.7217 2.0714 32 1 5.0169 -0.3507 1.3027 33 1 5.0816 1.1674 0.3755 34 1 5.0499 1.2117 2.1546 35 1 2.9309 -0.9769 2.5301 36 1 1.5126 0.0973 2.4787 37 1 1.6754 -0.9822 5.9940 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169294502.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:44 Heat of formation + Delta-G solvation = -4.547376 kcal Electronic energy + Delta-G solvation = -18032.402958 eV Core-core repulsion = 15389.721900 eV Total energy + Delta-G solvation = -2642.681058 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.07631 -35.92616 -34.39438 -32.37513 -32.09058 -30.24194 -28.46027 -26.72201 -25.17466 -23.44522 -22.48462 -20.65132 -19.27227 -17.72885 -16.29242 -16.16804 -15.28854 -14.81729 -14.63050 -14.34899 -13.65574 -13.33400 -12.91916 -12.82703 -12.30605 -12.00632 -11.87840 -11.35985 -11.25007 -11.18172 -11.05084 -10.83370 -10.64698 -10.52084 -10.27514 -10.12699 -10.03527 -9.95086 -9.68901 -9.08595 -8.78325 -8.30988 -7.87169 -5.92897 -3.94367 3.15662 3.25111 3.36375 3.40975 3.42889 4.49330 4.52123 4.59396 4.73584 5.04667 5.20352 5.31331 5.42685 5.53882 5.66637 5.76987 5.82160 5.91743 5.95513 6.08734 6.18272 6.20340 6.34950 6.40452 6.51375 6.69547 6.92067 7.03577 7.14039 7.50152 7.76493 7.78938 7.92474 7.99508 8.02040 8.09815 8.47540 9.11361 9.68005 11.18307 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.029277 B = 0.008322 C = 0.007560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.168865 B = 3363.618917 C = 3702.897182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.249 3.751 4 O -0.535 6.535 5 C -0.172 4.172 6 C 0.085 3.915 7 H 0.079 0.921 8 C -0.142 4.142 9 N -0.685 5.685 10 C 0.075 3.925 11 C -0.069 4.069 12 C -0.126 4.126 13 C 0.043 3.957 14 C -0.514 4.514 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.887 3.113 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.278 1.278 22 H 0.213 0.787 23 H 0.365 0.635 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.336 0.664 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.030 0.970 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.016 0.984 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.359 3.526 -13.721 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.186 4.186 3 C 0.208 3.792 4 O -0.339 6.339 5 C -0.212 4.212 6 C -0.025 4.025 7 H 0.097 0.903 8 C -0.199 4.199 9 N -0.314 5.314 10 C -0.054 4.054 11 C -0.071 4.071 12 C -0.183 4.183 13 C 0.005 3.995 14 C -0.553 4.553 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.715 3.285 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.230 0.770 23 H 0.211 0.789 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.155 0.845 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.035 0.965 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.075 4.138 -13.025 13.709 hybrid contribution 0.197 -0.802 0.435 0.933 sum 1.272 3.337 -12.590 13.087 Atomic orbital electron populations 1.24832 0.95815 0.99638 1.01865 1.23780 0.94993 1.00590 0.99224 1.18301 0.81771 0.82999 0.96114 1.86771 1.75262 1.22674 1.49218 1.23022 1.02149 0.98479 0.97514 1.21505 1.00132 0.90015 0.90893 0.90304 1.21790 1.00888 1.00861 0.96411 1.60838 1.13932 1.54764 1.01853 1.22113 1.00112 0.91589 0.91580 1.21258 0.96045 0.95439 0.94342 1.21746 0.94507 1.02128 0.99933 1.19030 0.95806 0.95873 0.88770 1.21212 1.29224 1.13948 0.90876 0.92468 1.25001 0.95295 0.95092 0.98974 1.69974 1.35084 1.25190 1.23063 0.86738 0.79152 0.79915 0.82662 1.20273 1.21434 1.20337 0.77001 0.78908 0.90246 0.91911 0.92640 0.91881 0.92878 0.84528 0.91390 0.88904 0.92323 0.95157 0.91447 0.95775 0.96520 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.44 19.25 29.55 0.57 -2.87 16 2 C -0.19 -3.42 8.48 -37.12 -0.31 -3.74 16 3 C 0.25 4.46 0.48 -93.29 -0.04 4.41 16 4 O -0.54 -9.72 11.63 -35.23 -0.41 -10.13 16 5 C -0.17 -2.46 4.11 -26.65 -0.11 -2.57 16 6 C 0.09 1.20 2.82 -67.72 -0.19 1.00 16 7 H 0.08 1.21 7.31 -51.93 -0.38 0.83 16 8 C -0.14 -1.57 9.47 37.16 0.35 -1.22 16 9 N -0.68 -10.72 6.43 -106.75 -0.69 -11.41 16 10 C 0.07 1.43 4.86 -3.83 -0.02 1.42 16 11 C -0.07 -1.40 0.13 -154.43 -0.02 -1.42 16 12 C -0.13 -2.40 7.44 37.16 0.28 -2.13 16 13 C 0.04 1.11 3.64 -27.88 -0.10 1.01 16 14 C -0.51 -14.21 7.66 -34.44 -0.26 -14.47 16 15 H 0.06 1.51 5.69 -52.49 -0.30 1.21 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -27.24 13.29 55.43 0.74 -26.51 16 18 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H 0.21 2.75 7.80 -54.10 -0.42 2.33 16 23 H 0.37 4.92 9.03 45.56 0.41 5.33 16 24 H 0.08 1.11 6.58 -51.93 -0.34 0.77 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.34 4.92 7.08 -39.29 -0.28 4.64 16 30 H 0.07 1.40 7.31 -51.93 -0.38 1.02 16 31 H 0.09 1.90 6.67 -51.93 -0.35 1.56 16 32 H 0.06 1.19 7.63 -51.93 -0.40 0.79 16 33 H 0.03 0.48 5.12 -51.93 -0.27 0.21 16 34 H 0.07 1.35 6.61 -51.93 -0.34 1.01 16 35 H 0.02 0.70 7.76 -51.93 -0.40 0.30 16 36 H 0.02 0.47 7.17 -51.93 -0.37 0.10 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 288.67 15.07 4.35 4.35 Total: -1.00 -31.43 288.67 -5.64 -37.06 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -4.64 Total: 8.92 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 0.04 Total: -19.03 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.05 Total: -37.92 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.41 Total: -10.13 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.43 -5.64 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169294502.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.515 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds