Wall clock time and date at job start Mon Mar 30 2020 07:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42906 * 109.57089 * 359.56830 * 3 2 1 5 5 C 1.53115 * 109.52394 * 119.72790 * 3 2 1 6 6 C 1.53036 * 109.27887 * 62.24860 * 5 3 2 7 7 H 1.08998 * 109.46461 * 299.16610 * 6 5 3 8 8 C 1.52998 * 109.46537 * 179.19391 * 6 5 3 9 9 N 1.46855 * 109.52070 * 59.17779 * 6 5 3 10 10 C 1.46848 * 111.19771 * 298.25655 * 9 6 5 11 11 C 1.53041 * 109.52158 * 61.74407 * 10 9 6 12 12 C 1.53003 * 109.53605 * 60.77921 * 11 10 9 13 13 C 1.53001 * 109.50223 * 180.87494 * 11 10 9 14 14 C 1.50697 * 109.46995 * 299.80512 * 13 11 10 15 15 H 1.07991 * 120.00449 * 359.72153 * 14 13 11 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 13 11 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48498 * 109.47416 * 59.99812 * 18 16 14 20 20 H 1.48508 * 109.46609 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46903 * 299.99397 * 18 16 14 22 22 H 4.38654 * 5.43549 * 180.02562 * 4 1 2 23 23 H 0.96700 * 113.99975 * 59.84860 * 4 3 2 24 24 H 1.08998 * 109.50432 * 182.19190 * 5 3 2 25 25 H 1.09002 * 109.50093 * 302.31126 * 5 3 2 26 26 H 1.08999 * 109.46957 * 59.99974 * 8 6 5 27 27 H 1.08992 * 109.47248 * 180.02562 * 8 6 5 28 28 H 1.09005 * 109.47069 * 300.00682 * 8 6 5 29 29 H 1.00898 * 110.99660 * 62.35355 * 9 6 5 30 30 H 1.08995 * 109.46489 * 301.72836 * 10 9 6 31 31 H 1.09005 * 109.45805 * 181.75291 * 10 9 6 32 32 H 1.08998 * 109.46956 * 180.09546 * 12 11 10 33 33 H 1.09001 * 109.47033 * 300.09640 * 12 11 10 34 34 H 1.08996 * 109.47437 * 60.09668 * 12 11 10 35 35 H 1.08998 * 109.47065 * 179.79938 * 13 11 10 36 36 H 1.09001 * 109.46892 * 59.80202 * 13 11 10 37 37 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1254 -1.3456 0.0101 5 6 3.1575 0.7165 -1.2532 6 6 2.6917 2.1741 -1.2280 7 1 1.6022 2.2072 -1.2226 8 6 3.2174 2.8988 -2.4687 9 7 3.2072 2.8332 -0.0212 10 6 2.6916 2.1922 1.1953 11 6 3.1573 0.7352 1.2424 12 6 4.6864 0.6875 1.2709 13 6 2.6018 0.0617 2.4989 14 6 3.1055 0.7853 3.7210 15 1 3.7603 1.6372 3.6127 16 6 2.7345 0.3564 4.9779 17 7 1.9367 -0.6807 5.1098 18 14 3.3650 1.2487 6.4930 19 1 2.9233 2.6659 6.4527 20 1 2.8247 0.5957 7.7125 21 1 4.8488 1.1931 6.5185 22 1 -1.0498 -0.0004 -0.0002 23 1 2.8393 -1.8707 -0.7498 24 1 4.2467 0.6828 -1.2726 25 1 2.7616 0.2233 -2.1410 26 1 2.8341 2.4102 -3.3645 27 1 2.8861 3.9370 -2.4507 28 1 4.3069 2.8653 -2.4747 29 1 4.2161 2.8498 -0.0213 30 1 1.6022 2.2252 1.1893 31 1 3.0662 2.7217 2.0714 32 1 5.0169 -0.3507 1.3027 33 1 5.0816 1.1674 0.3755 34 1 5.0499 1.2117 2.1546 35 1 2.9309 -0.9769 2.5301 36 1 1.5126 0.0973 2.4787 37 1 1.6754 -0.9822 5.9940 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169294502.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:44 Heat of formation + Delta-G solvation = -28.431943 kcal Electronic energy + Delta-G solvation = -18033.438671 eV Core-core repulsion = 15389.721900 eV Total energy + Delta-G solvation = -2643.716770 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.48967 -37.26592 -36.08947 -34.09513 -33.69137 -31.58849 -29.92660 -28.42294 -26.76261 -24.97912 -24.16893 -21.89197 -20.79278 -19.18024 -18.40417 -17.50052 -16.76025 -16.41490 -16.12404 -15.84511 -15.16215 -14.72954 -14.34227 -14.29033 -13.97382 -13.54489 -13.20102 -13.00631 -12.78953 -12.64051 -12.56135 -12.43362 -12.36713 -12.11114 -11.81291 -11.68798 -11.51531 -11.43892 -11.29832 -11.00144 -10.53348 -10.42904 -9.25984 -8.14492 -6.23491 1.39701 1.42744 1.49795 1.78199 1.86796 2.42654 3.17675 3.26230 3.31768 3.46490 3.81649 3.95934 4.05785 4.31587 4.36542 4.50047 4.57437 4.67697 4.79026 4.83043 4.91562 4.99062 5.03164 5.11452 5.20306 5.33324 5.39151 5.40170 5.48521 5.56832 5.79665 5.88552 6.13139 6.28918 6.57629 6.66564 6.80778 6.93625 7.44058 8.97625 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.029277 B = 0.008322 C = 0.007560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.168865 B = 3363.618917 C = 3702.897182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.226 4.226 3 C 0.245 3.755 4 O -0.558 6.558 5 C -0.160 4.160 6 C 0.084 3.916 7 H 0.065 0.935 8 C -0.134 4.134 9 N -0.677 5.677 10 C 0.089 3.911 11 C -0.068 4.068 12 C -0.118 4.118 13 C 0.058 3.942 14 C -0.522 4.522 15 H 0.069 0.931 16 C -0.004 4.004 17 N -0.937 5.937 18 Si 0.958 3.042 19 H -0.265 1.265 20 H -0.288 1.288 21 H -0.267 1.267 22 H 0.244 0.756 23 H 0.384 0.616 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.346 0.654 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.053 0.947 35 H -0.021 1.021 36 H -0.019 1.019 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 5.042 -15.280 16.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.227 4.227 3 C 0.205 3.795 4 O -0.365 6.365 5 C -0.199 4.199 6 C -0.027 4.027 7 H 0.083 0.917 8 C -0.191 4.191 9 N -0.307 5.307 10 C -0.041 4.041 11 C -0.070 4.070 12 C -0.176 4.176 13 C 0.020 3.980 14 C -0.560 4.560 15 H 0.087 0.913 16 C -0.201 4.201 17 N -0.578 5.578 18 Si 0.783 3.217 19 H -0.190 1.190 20 H -0.214 1.214 21 H -0.192 1.192 22 H 0.261 0.739 23 H 0.233 0.767 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.166 0.834 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.072 0.928 35 H -0.003 1.003 36 H -0.001 1.001 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.043 5.665 -14.619 15.811 hybrid contribution -0.172 -1.332 0.888 1.610 sum 1.871 4.333 -13.731 14.520 Atomic orbital electron populations 1.25714 0.96865 0.98287 1.00481 1.24246 0.95935 1.01914 1.00560 1.18296 0.81721 0.83043 0.96480 1.86714 1.75534 1.23379 1.50888 1.22939 1.02547 0.98139 0.96267 1.21602 0.99535 0.90224 0.91303 0.91692 1.21734 1.01625 1.00622 0.95149 1.60793 1.14557 1.54229 1.01074 1.21770 0.98801 0.90695 0.92833 1.21134 0.96759 0.96093 0.93026 1.21651 0.93472 1.01263 1.01169 1.18756 0.93530 0.93837 0.91835 1.21635 1.28753 1.14006 0.91584 0.91296 1.25967 0.95541 0.95908 1.02661 1.70139 1.36810 1.27128 1.23764 0.85599 0.78934 0.78912 0.78221 1.19008 1.21396 1.19152 0.73938 0.76720 0.89277 0.89556 0.90798 0.91719 0.91636 0.83445 0.93429 0.90669 0.94014 0.91321 0.92786 1.00261 1.00111 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.56 19.25 74.32 1.43 -5.13 16 2 C -0.23 -8.37 8.48 31.13 0.26 -8.10 16 3 C 0.25 8.68 0.48 -12.52 -0.01 8.68 16 4 O -0.56 -20.34 11.63 -148.98 -1.73 -22.07 16 5 C -0.16 -4.14 4.11 30.64 0.13 -4.01 16 6 C 0.08 2.13 2.82 44.94 0.13 2.26 16 7 H 0.06 1.87 7.31 -2.39 -0.02 1.85 16 8 C -0.13 -2.43 9.47 71.98 0.68 -1.75 16 9 N -0.68 -19.88 6.43 -491.66 -3.16 -23.04 16 10 C 0.09 3.40 4.86 86.33 0.42 3.82 16 11 C -0.07 -2.81 0.13 -52.13 -0.01 -2.81 16 12 C -0.12 -4.45 7.44 71.98 0.54 -3.92 16 13 C 0.06 3.17 3.64 29.85 0.11 3.28 16 14 C -0.52 -29.59 7.66 25.60 0.20 -29.39 16 15 H 0.07 3.67 5.69 -2.92 -0.02 3.65 16 16 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 17 N -0.94 -59.17 13.29 21.45 0.28 -58.88 16 18 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H 0.24 5.99 7.80 -4.43 -0.03 5.95 16 23 H 0.38 10.13 9.03 -74.06 -0.67 9.46 16 24 H 0.09 2.15 6.58 -2.39 -0.02 2.14 16 25 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.35 9.11 7.08 -89.70 -0.64 8.48 16 30 H 0.05 2.00 7.31 -2.39 -0.02 1.98 16 31 H 0.07 3.10 6.67 -2.38 -0.02 3.09 16 32 H 0.04 1.69 7.63 -2.39 -0.02 1.67 16 33 H 0.07 2.02 5.12 -2.39 -0.01 2.01 16 34 H 0.05 2.14 6.61 -2.39 -0.02 2.13 16 35 H -0.02 -1.32 7.76 -2.39 -0.02 -1.34 16 36 H -0.02 -1.19 7.17 -2.39 -0.02 -1.20 16 37 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -70.76 288.67 1.52 -69.24 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -0.23 Total: 24.44 kcal Atomic # 6 Polarization: -41.19 SS G_CDS: 4.34 Total: -36.85 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -2.88 Total: -81.93 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.73 Total: -22.07 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -70.76 1.52 -69.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169294502.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.808 kcal (2) G-P(sol) polarization free energy of solvation -70.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds