Wall clock time and date at job start Mon Mar 30 2020 07:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86813 * 120.00034 * 2 1 4 4 H 1.48499 * 109.46589 * 239.99986 * 3 2 1 5 5 H 1.48494 * 109.46969 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46838 * 120.00068 * 3 2 1 7 7 C 1.37872 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00750 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99521 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.46325 * 300.01762 * 9 7 2 11 11 N 1.46845 * 109.46619 * 59.99767 * 9 7 2 12 12 C 1.46849 * 111.19662 * 58.25941 * 11 9 7 13 13 H 1.08993 * 109.46583 * 301.73027 * 12 11 9 14 14 C 1.53004 * 109.45196 * 181.75636 * 12 11 9 15 15 O 1.42895 * 109.47196 * 64.95115 * 14 12 11 16 16 C 1.53041 * 109.52184 * 61.74946 * 12 11 9 17 17 H 1.09001 * 109.50069 * 180.87878 * 16 12 11 18 18 O 1.42894 * 109.50403 * 60.75896 * 16 12 11 19 19 C 1.53117 * 109.27269 * 300.81744 * 16 12 11 20 20 H 1.09006 * 109.52224 * 297.68346 * 19 16 12 21 21 O 1.42903 * 109.52177 * 177.56424 * 19 16 12 22 22 C 1.53038 * 109.45222 * 180.02562 * 9 7 2 23 23 H 1.09002 * 109.50635 * 179.22430 * 22 9 7 24 24 O 1.42908 * 109.50139 * 59.11357 * 22 9 7 25 25 H 0.97006 * 119.99743 * 359.97438 * 1 2 3 26 26 H 1.00899 * 111.00285 * 182.36337 * 11 9 7 27 27 H 1.09000 * 109.46846 * 184.95676 * 14 12 11 28 28 H 1.09002 * 109.46822 * 304.95435 * 14 12 11 29 29 H 0.96706 * 113.99770 * 179.97438 * 15 14 12 30 30 H 0.96701 * 113.99762 * 180.20439 * 18 16 12 31 31 H 0.96700 * 114.00311 * 180.02562 * 21 19 16 32 32 H 0.96699 * 113.99540 * 180.20062 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6239 -2.5563 0.8902 11 7 0.4073 -2.5770 -1.1988 12 6 1.2113 -2.4614 -2.4221 13 1 1.7564 -1.5176 -2.4107 14 6 0.2903 -2.5034 -3.6431 15 8 -0.5599 -1.3549 -3.6382 16 6 2.2050 -3.6232 -2.4927 17 1 2.8122 -3.5285 -3.3929 18 8 1.4907 -4.8604 -2.5260 19 6 3.1111 -3.5890 -1.2589 20 1 3.6857 -2.6627 -1.2545 21 8 4.0037 -4.7045 -1.2909 22 6 2.2459 -3.6620 0.0018 23 1 1.7018 -4.6064 0.0157 24 8 3.0806 -3.5744 1.1585 25 1 -0.4850 0.8401 0.0004 26 1 -0.1376 -3.4262 -1.2030 27 1 0.8919 -2.5064 -4.5521 28 1 -0.3190 -3.4066 -3.6077 29 1 -1.1719 -1.3154 -4.3860 30 1 2.0591 -5.6416 -2.5680 31 1 4.6082 -4.7463 -0.5372 32 1 3.7388 -4.2799 1.2228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169321436.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:03 Heat of formation + Delta-G solvation = -184.842121 kcal Electronic energy + Delta-G solvation = -18298.811884 eV Core-core repulsion = 15259.793602 eV Total energy + Delta-G solvation = -3039.018282 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.114 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.53769 -36.65096 -35.75488 -35.22895 -34.18440 -31.97942 -29.61946 -28.71096 -25.56920 -24.45660 -21.83446 -20.64492 -19.38797 -17.44194 -16.95931 -16.70550 -16.46726 -15.54335 -15.09954 -14.64281 -14.30074 -13.93958 -13.53978 -13.14086 -12.84147 -12.51062 -12.08561 -11.87763 -11.65263 -11.19846 -10.89299 -10.71999 -10.64518 -10.38845 -10.01367 -9.66784 -9.45035 -9.32538 -9.20076 -8.60952 -8.24334 -6.89718 -5.76177 -3.87643 3.40788 3.46535 3.47903 4.24132 4.54002 4.57419 4.86931 5.14216 5.33183 5.39914 5.57988 5.66678 5.77693 5.86443 5.93481 6.03781 6.08136 6.31722 6.45529 6.70150 6.95616 7.54798 7.72205 7.93279 7.99242 8.13541 8.28318 8.36161 8.62580 8.90539 9.21734 9.77311 11.28429 Molecular weight = 233.11amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.013732 C = 0.009841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.745856 B = 2038.614046 C = 2844.421228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.085 3.915 3 Si 0.879 3.121 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.528 4.528 8 H 0.053 0.947 9 C 0.227 3.773 10 H 0.050 0.950 11 N -0.618 5.618 12 C 0.112 3.888 13 H 0.111 0.889 14 C 0.093 3.907 15 O -0.543 6.543 16 C 0.089 3.911 17 H 0.049 0.951 18 O -0.561 6.561 19 C 0.047 3.953 20 H 0.081 0.919 21 O -0.581 6.581 22 C 0.056 3.944 23 H 0.039 0.961 24 O -0.545 6.545 25 H 0.256 0.744 26 H 0.308 0.692 27 H 0.030 0.970 28 H 0.042 0.958 29 H 0.360 0.640 30 H 0.374 0.626 31 H 0.373 0.627 32 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.988 -7.964 -5.791 10.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.123 4.123 3 Si 0.707 3.293 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.567 4.567 8 H 0.071 0.929 9 C 0.119 3.881 10 H 0.068 0.932 11 N -0.245 5.245 12 C 0.001 3.999 13 H 0.129 0.871 14 C 0.014 3.986 15 O -0.345 6.345 16 C 0.027 3.973 17 H 0.067 0.933 18 O -0.367 6.367 19 C -0.012 4.012 20 H 0.099 0.901 21 O -0.388 6.388 22 C -0.005 4.005 23 H 0.056 0.944 24 O -0.346 6.346 25 H 0.066 0.934 26 H 0.125 0.875 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.203 0.797 30 H 0.220 0.780 31 H 0.221 0.779 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.731 -6.206 -5.615 8.804 hybrid contribution 1.942 -0.911 -0.238 2.159 sum 4.673 -7.118 -5.853 10.332 Atomic orbital electron populations 1.70061 1.05485 1.25686 1.45751 1.24912 0.94575 0.98296 0.94501 0.86913 0.79788 0.84344 0.78273 1.20562 1.21422 1.20555 1.20650 0.91956 0.89599 1.54500 0.92907 1.19149 0.88339 0.90535 0.90074 0.93190 1.60883 1.24257 1.39502 0.99888 1.21449 0.92014 0.95509 0.90953 0.87141 1.22018 0.92324 0.88060 0.96150 1.86821 1.53139 1.44500 1.50009 1.22780 0.93300 0.86461 0.94712 0.93257 1.86425 1.37488 1.15649 1.97095 1.23349 0.91344 0.89037 0.97450 0.90079 1.86342 1.52326 1.50004 1.50135 1.23569 0.92507 1.01193 0.83242 0.94355 1.86836 1.50188 1.52571 1.45022 0.93425 0.87547 0.95204 0.93965 0.79661 0.77954 0.77940 0.80948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.67 12.77 55.43 0.71 -23.96 16 2 C 0.08 2.39 5.39 -17.82 -0.10 2.29 16 3 Si 0.88 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.53 -14.40 6.12 -34.44 -0.21 -14.61 16 8 H 0.05 1.45 6.69 -52.49 -0.35 1.10 16 9 C 0.23 5.68 2.71 -68.87 -0.19 5.50 16 10 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 11 N -0.62 -14.62 5.55 -100.98 -0.56 -15.18 16 12 C 0.11 2.37 2.27 -67.72 -0.15 2.22 16 13 H 0.11 2.69 6.99 -51.93 -0.36 2.33 16 14 C 0.09 1.70 6.39 37.16 0.24 1.94 16 15 O -0.54 -10.75 13.61 -35.23 -0.48 -11.23 16 16 C 0.09 1.61 2.99 -26.65 -0.08 1.53 16 17 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 18 O -0.56 -9.38 11.65 -46.49 -0.54 -9.92 16 19 C 0.05 0.86 2.76 -26.63 -0.07 0.79 16 20 H 0.08 1.67 6.74 -51.93 -0.35 1.32 16 21 O -0.58 -8.80 12.73 -55.38 -0.70 -9.50 16 22 C 0.06 1.16 2.82 -26.67 -0.08 1.09 16 23 H 0.04 0.78 7.80 -51.93 -0.40 0.38 16 24 O -0.54 -10.82 12.85 -42.41 -0.55 -11.37 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.31 7.00 8.32 -39.29 -0.33 6.67 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.75 7.82 -51.93 -0.41 0.34 16 29 H 0.36 4.98 9.12 45.56 0.42 5.40 16 30 H 0.37 5.14 8.54 45.56 0.39 5.53 16 31 H 0.37 4.24 7.80 45.56 0.36 4.59 16 32 H 0.35 4.83 7.80 45.56 0.36 5.19 16 LS Contribution 261.80 15.07 3.95 3.95 Total: -1.00 -33.18 261.80 -4.93 -38.10 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -1.09 Total: 21.62 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -0.64 Total: 0.75 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.15 Total: -39.14 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -2.27 Total: -42.01 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.18 -4.93 -38.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169321436.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.741 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds