Wall clock time and date at job start Mon Mar 30 2020 07:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99794 * 2 1 4 4 H 1.48495 * 109.47279 * 240.00068 * 3 2 1 5 5 H 1.48495 * 109.47055 * 119.99830 * 3 2 1 6 6 H 1.48504 * 109.46860 * 0.02562 * 3 2 1 7 7 C 1.37873 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00123 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99832 * 0.02562 * 7 2 1 10 10 H 1.09010 * 110.66411 * 303.21350 * 9 7 2 11 11 C 1.55001 * 110.75091 * 66.62655 * 9 7 2 12 12 C 1.55821 * 102.78395 * 118.32598 * 11 9 7 13 13 H 1.09010 * 115.93000 * 201.56339 * 12 11 9 14 14 O 1.46534 * 101.24747 * 327.58124 * 12 11 9 15 15 C 1.46538 * 99.68055 * 54.15915 * 14 12 11 16 16 H 1.09000 * 116.25794 * 179.97438 * 15 14 12 17 17 C 1.55828 * 101.24254 * 54.16155 * 15 14 12 18 18 H 1.08996 * 110.74625 * 85.90247 * 17 15 14 19 19 C 1.50693 * 110.74587 * 209.25817 * 17 15 14 20 20 O 1.20828 * 120.00145 * 97.21570 * 19 17 15 21 21 O 1.34230 * 120.00254 * 277.21004 * 19 17 15 22 22 C 1.55005 * 102.78544 * 327.58113 * 17 15 14 23 23 H 1.09003 * 110.74662 * 241.49502 * 22 17 15 24 24 C 1.50704 * 110.74936 * 118.32710 * 22 17 15 25 25 O 1.20828 * 119.99567 * 241.45154 * 24 22 17 26 26 O 1.34225 * 119.99605 * 61.45004 * 24 22 17 27 27 H 0.97002 * 119.99899 * 179.97438 * 1 2 3 28 28 H 1.09003 * 110.74930 * 236.65079 * 11 9 7 29 29 H 1.08993 * 110.74946 * 0.02562 * 11 9 7 30 30 H 0.96697 * 117.00810 * 180.02562 * 21 19 17 31 31 H 0.96706 * 116.99132 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5746 -2.5527 0.8536 11 6 0.4790 -2.6875 -1.3302 12 6 1.1214 -3.9780 -1.9218 13 1 1.0126 -4.1144 -2.9979 14 8 2.4977 -3.8624 -1.4323 15 6 2.2370 -3.7057 0.0012 16 1 3.1123 -3.5942 0.6411 17 6 1.3553 -4.9580 0.2883 18 1 1.9772 -5.8277 0.5004 19 6 0.4026 -4.6908 1.4249 20 8 -0.7365 -4.3610 1.1936 21 8 0.8195 -4.8194 2.6944 22 6 0.5833 -5.1464 -1.0426 23 1 -0.4907 -5.0502 -0.8829 24 6 0.9111 -6.4787 -1.6660 25 8 1.4317 -6.5241 -2.7555 26 8 0.6249 -7.6147 -1.0109 27 1 -0.4850 -0.8401 -0.0004 28 1 -0.5842 -2.8367 -1.1421 29 1 0.6397 -1.8377 -1.9935 30 1 0.1723 -4.6378 3.3896 31 1 0.8542 -8.4448 -1.4510 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169365951.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:38 Heat of formation + Delta-G solvation = -241.213406 kcal Electronic energy + Delta-G solvation = -20260.252666 eV Core-core repulsion = 16891.930477 eV Total energy + Delta-G solvation = -3368.322189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 256.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.94489 -41.06996 -40.31457 -37.22152 -37.14862 -35.56890 -33.65385 -31.53037 -31.28042 -27.22818 -25.45628 -24.08440 -22.40606 -21.98946 -20.78776 -19.55273 -19.07064 -18.86511 -18.31299 -17.95839 -17.37228 -16.46006 -16.41747 -15.81097 -15.64491 -15.08941 -14.79320 -14.33353 -13.99759 -13.80969 -13.53405 -13.03733 -12.85809 -12.61885 -12.57174 -12.55930 -12.43197 -12.01090 -11.94934 -11.90579 -11.65438 -11.43013 -10.89594 -10.54552 -10.46533 -8.59205 -6.31200 0.94035 1.09672 1.54651 1.61809 1.72597 1.80755 2.09819 2.57658 2.80883 3.02151 3.20191 3.25494 3.66668 3.85271 3.98471 4.15963 4.22947 4.28356 4.37697 4.43609 4.65328 4.79670 4.99024 5.10378 5.25971 5.46518 5.51151 5.60742 6.06334 6.20914 6.63230 6.88982 6.90890 7.47341 8.80609 Molecular weight = 256.09amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.007953 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.410893 B = 3519.841679 C = 4039.280052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.029 4.029 3 Si 1.111 2.889 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.287 1.287 7 C -0.601 4.601 8 H 0.049 0.951 9 C 0.001 3.999 10 H 0.021 0.979 11 C -0.129 4.129 12 C 0.089 3.911 13 H 0.145 0.855 14 O -0.372 6.372 15 C 0.088 3.912 16 H 0.148 0.852 17 C -0.098 4.098 18 H 0.143 0.857 19 C 0.505 3.495 20 O -0.535 6.535 21 O -0.503 6.503 22 C -0.102 4.102 23 H 0.137 0.863 24 C 0.506 3.494 25 O -0.529 6.529 26 O -0.504 6.504 27 H 0.260 0.740 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.429 0.571 31 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 -13.804 2.279 14.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.228 4.228 3 Si 0.933 3.067 4 H -0.201 1.201 5 H -0.194 1.194 6 H -0.213 1.213 7 C -0.638 4.638 8 H 0.067 0.933 9 C -0.018 4.018 10 H 0.039 0.961 11 C -0.168 4.168 12 C 0.031 3.969 13 H 0.162 0.838 14 O -0.290 6.290 15 C 0.031 3.969 16 H 0.165 0.835 17 C -0.117 4.117 18 H 0.161 0.839 19 C 0.348 3.652 20 O -0.425 6.425 21 O -0.317 6.317 22 C -0.121 4.121 23 H 0.155 0.845 24 C 0.349 3.651 25 O -0.418 6.418 26 O -0.318 6.318 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.291 0.709 31 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 1.675 -11.838 1.702 12.076 hybrid contribution -0.625 -1.877 0.186 1.987 sum 1.050 -13.714 1.888 13.884 Atomic orbital electron populations 1.70896 1.07757 1.30332 1.48172 1.27111 0.96575 1.06114 0.92968 0.82998 0.74156 0.71711 0.77803 1.20105 1.19378 1.21255 1.22178 0.94263 0.92366 1.55034 0.93273 1.20600 0.93509 0.94360 0.93320 0.96139 1.23279 0.98449 0.95930 0.99099 1.24625 0.81423 0.91720 0.99128 0.83760 1.90060 1.25577 1.93385 1.19999 1.24760 0.97576 0.91215 0.83379 0.83507 1.22567 0.96243 1.03479 0.89450 0.83922 1.22629 0.86699 0.71737 0.84146 1.90711 1.22081 1.44306 1.85361 1.84439 1.49109 1.81765 1.16360 1.22709 1.04398 0.90157 0.94886 0.84540 1.22655 0.73531 0.86147 0.82784 1.90718 1.40523 1.88167 1.22435 1.84490 1.77469 1.17629 1.52227 0.92973 0.92641 0.93353 0.70862 0.70457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.49 21.45 0.29 -56.09 16 2 C -0.03 -1.63 5.25 84.65 0.44 -1.19 16 3 Si 1.11 50.01 29.90 68.60 2.05 52.06 16 4 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.60 -32.93 8.43 25.60 0.22 -32.72 16 8 H 0.05 2.68 7.78 -2.91 -0.02 2.65 16 9 C 0.00 0.03 1.67 -9.88 -0.02 0.02 16 10 H 0.02 1.07 5.41 -2.38 -0.01 1.05 16 11 C -0.13 -5.93 4.81 32.25 0.16 -5.77 16 12 C 0.09 3.38 4.64 32.54 0.15 3.53 16 13 H 0.14 5.11 7.72 -2.38 -0.02 5.10 16 14 O -0.37 -15.51 11.65 -148.98 -1.73 -17.24 16 15 C 0.09 3.45 4.82 32.55 0.16 3.60 16 16 H 0.15 5.29 8.14 -2.39 -0.02 5.27 16 17 C -0.10 -3.08 3.09 -9.88 -0.03 -3.11 16 18 H 0.14 3.61 7.76 -2.39 -0.02 3.59 16 19 C 0.50 16.37 5.89 71.23 0.42 16.79 16 20 O -0.53 -20.44 15.31 21.96 0.34 -20.11 16 21 O -0.50 -12.82 13.42 -51.41 -0.69 -13.51 16 22 C -0.10 -3.27 2.54 -9.88 -0.03 -3.30 16 23 H 0.14 4.43 6.37 -2.39 -0.02 4.42 16 24 C 0.51 14.04 7.48 71.24 0.53 14.57 16 25 O -0.53 -17.39 16.64 21.96 0.37 -17.02 16 26 O -0.50 -9.83 13.41 -51.37 -0.69 -10.52 16 27 H 0.26 15.86 6.32 -92.71 -0.59 15.27 16 28 H 0.05 2.53 7.76 -2.39 -0.02 2.51 16 29 H 0.05 2.49 7.65 -2.39 -0.02 2.47 16 30 H 0.43 7.23 9.10 -74.06 -0.67 6.56 16 31 H 0.43 4.01 9.10 -74.05 -0.67 3.33 16 Total: -1.00 -73.58 266.86 1.97 -71.60 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.04 Total: 18.39 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 2.00 Total: -7.57 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.29 Total: -56.09 kcal Atomic # 8 Polarization: -75.98 SS G_CDS: -2.41 Total: -78.40 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.05 Total: 52.06 kcal Total: -73.58 1.97 -71.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169365951.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.610 kcal (2) G-P(sol) polarization free energy of solvation -73.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds