Wall clock time and date at job start Mon Mar 30 2020 07:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86810 * 119.99589 * 2 1 4 4 H 1.48500 * 109.47150 * 266.47496 * 3 2 1 5 5 H 1.48499 * 109.47146 * 26.47543 * 3 2 1 6 6 H 1.48496 * 109.46909 * 146.47597 * 3 2 1 7 7 C 1.37871 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00331 * 354.66770 * 7 2 1 9 9 C 1.50700 * 119.99841 * 174.67273 * 7 2 1 10 10 O 1.42892 * 109.48344 * 326.85881 * 9 7 2 11 11 O 1.42904 * 109.47765 * 206.83638 * 9 7 2 12 12 C 1.42905 * 114.09886 * 178.85163 * 11 9 7 13 13 H 1.09005 * 109.47547 * 301.17591 * 12 11 9 14 14 C 1.52997 * 109.48488 * 181.15547 * 12 11 9 15 15 O 1.42895 * 109.47272 * 64.99105 * 14 12 11 16 16 C 1.53093 * 109.41805 * 61.15382 * 12 11 9 17 17 H 1.08993 * 109.52152 * 182.48979 * 16 12 11 18 18 O 1.42897 * 109.51849 * 62.29946 * 16 12 11 19 19 C 1.53180 * 109.16385 * 302.39659 * 16 12 11 20 20 H 1.08996 * 109.54453 * 176.93793 * 19 16 12 21 21 O 1.42907 * 109.54258 * 297.11216 * 19 16 12 22 22 C 1.53093 * 109.49211 * 86.89261 * 9 7 2 23 23 H 1.09006 * 109.51559 * 297.49852 * 22 9 7 24 24 O 1.42896 * 109.52559 * 57.68397 * 22 9 7 25 25 H 0.96996 * 120.00408 * 359.97438 * 1 2 3 26 26 H 0.96707 * 113.99935 * 294.13356 * 10 9 7 27 27 H 1.08997 * 109.47116 * 185.00104 * 14 12 11 28 28 H 1.09007 * 109.47011 * 304.99551 * 14 12 11 29 29 H 0.96710 * 114.00023 * 180.02562 * 15 14 12 30 30 H 0.96701 * 114.00003 * 60.00515 * 18 16 12 31 31 H 0.96701 * 113.99311 * 300.00143 * 21 19 16 32 32 H 0.96699 * 114.00286 * 180.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.5711 2.0036 -1.3974 5 1 1.4112 2.6731 0.6242 6 1 3.5074 1.4630 0.7732 7 6 2.0046 -1.1939 -0.0005 8 1 1.4682 -2.1273 0.0860 9 6 3.5067 -1.1966 -0.1217 10 8 3.9203 -0.1045 -0.9452 11 8 3.9351 -2.4262 -0.7104 12 6 5.3488 -2.5231 -0.8957 13 1 5.6884 -1.7073 -1.5340 14 6 5.6865 -3.8616 -1.5554 15 8 5.1294 -3.8983 -2.8708 16 6 6.0477 -2.4327 0.4634 17 1 7.1278 -2.4620 0.3202 18 8 5.6433 -3.5318 1.2822 19 6 5.6569 -1.1169 1.1433 20 1 6.1078 -1.0707 2.1345 21 8 6.1185 -0.0168 0.3565 22 6 4.1316 -1.0530 1.2685 23 1 3.8414 -0.0955 1.7011 24 8 3.6765 -2.1155 2.1087 25 1 -0.4850 0.8400 0.0004 26 1 3.6359 -0.1769 -1.8666 27 1 6.7690 -3.9740 -1.6159 28 1 5.2695 -4.6749 -0.9614 29 1 5.3043 -4.7204 -3.3492 30 1 5.8555 -4.3986 0.9099 31 1 7.0770 0.0016 0.2303 32 1 4.0333 -2.0870 3.0070 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169371311.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:43 Heat of formation + Delta-G solvation = -310.465470 kcal Electronic energy + Delta-G solvation = -21037.379774 eV Core-core repulsion = 17576.513201 eV Total energy + Delta-G solvation = -3460.866573 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.102 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.46089 -38.28496 -37.96096 -36.91605 -36.85185 -35.82160 -34.48287 -31.50116 -30.94820 -28.70611 -26.37512 -23.90161 -22.98993 -21.06595 -19.62026 -19.00264 -18.51547 -18.03391 -17.82378 -17.64512 -17.02324 -16.66759 -16.10060 -15.71557 -15.43249 -14.97170 -14.73524 -14.54211 -14.13306 -13.88746 -13.47516 -13.29125 -13.19285 -12.92886 -12.54249 -12.30721 -12.02145 -11.60660 -11.23139 -11.13161 -10.97272 -10.92710 -10.64921 -10.41195 -10.00371 -8.39891 -6.54395 1.43247 1.46316 1.69242 2.38713 2.64953 2.81839 3.05680 3.14904 3.21597 3.47291 3.77784 3.96918 4.09729 4.22577 4.24074 4.27742 4.48332 4.55716 4.57063 4.75655 4.93767 5.00955 5.44552 5.98530 6.15513 6.51911 6.79646 6.91235 6.95209 7.01816 7.05932 7.29448 8.74567 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.025099 B = 0.011141 C = 0.010163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.313260 B = 2512.654711 C = 2754.540427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.023 3.977 3 Si 1.015 2.985 4 H -0.280 1.280 5 H -0.330 1.330 6 H -0.254 1.254 7 C -0.536 4.536 8 H 0.026 0.974 9 C 0.392 3.608 10 O -0.553 6.553 11 O -0.392 6.392 12 C 0.043 3.957 13 H 0.065 0.935 14 C 0.084 3.916 15 O -0.590 6.590 16 C 0.066 3.934 17 H 0.104 0.896 18 O -0.550 6.550 19 C 0.080 3.920 20 H 0.084 0.916 21 O -0.544 6.544 22 C 0.110 3.890 23 H 0.045 0.955 24 O -0.530 6.530 25 H 0.270 0.730 26 H 0.377 0.623 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.397 0.603 30 H 0.386 0.614 31 H 0.391 0.609 32 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.736 -5.338 0.014 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.176 4.176 3 Si 0.847 3.153 4 H -0.207 1.207 5 H -0.262 1.262 6 H -0.179 1.179 7 C -0.574 4.574 8 H 0.045 0.955 9 C 0.316 3.684 10 O -0.363 6.363 11 O -0.314 6.314 12 C -0.015 4.015 13 H 0.083 0.917 14 C 0.007 3.993 15 O -0.398 6.398 16 C 0.006 3.994 17 H 0.122 0.878 18 O -0.357 6.357 19 C 0.020 3.980 20 H 0.102 0.898 21 O -0.351 6.351 22 C 0.050 3.950 23 H 0.062 0.938 24 O -0.335 6.335 25 H 0.079 0.921 26 H 0.227 0.773 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.246 0.754 30 H 0.235 0.765 31 H 0.240 0.760 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 18.345 -4.200 0.506 18.826 hybrid contribution 0.636 -0.362 -0.458 0.863 sum 18.981 -4.562 0.049 19.521 Atomic orbital electron populations 1.70065 1.08436 1.28698 1.50184 1.25886 0.95666 1.03533 0.92536 0.84659 0.76479 0.75308 0.78847 1.20652 1.26220 1.17940 1.21016 0.90659 0.93518 1.52211 0.95527 1.19792 0.90265 0.73403 0.84982 1.86197 1.79644 1.46029 1.24440 1.88209 1.21670 1.39385 1.82088 1.22927 0.83372 0.98891 0.96292 0.91712 1.22250 0.98178 0.95281 0.83623 1.86567 1.80401 1.44427 1.28407 1.22914 0.98478 0.88330 0.89696 0.87848 1.86585 1.85278 1.16491 1.47324 1.22400 0.95053 0.85595 0.94959 0.89785 1.86819 1.28557 1.45506 1.74200 1.21763 0.91052 0.89925 0.92268 0.93756 1.86695 1.71788 1.49336 1.25683 0.92076 0.77348 0.88339 0.92566 0.75366 0.76513 0.75982 0.77251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.48 13.96 21.45 0.30 -61.18 16 2 C 0.02 1.42 5.46 84.65 0.46 1.89 16 3 Si 1.01 52.05 24.36 68.60 1.67 53.72 16 4 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.33 -16.96 7.11 99.48 0.71 -16.25 16 6 H -0.25 -12.59 5.27 99.48 0.52 -12.06 16 7 C -0.54 -33.73 8.73 25.60 0.22 -33.51 16 8 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 9 C 0.39 19.90 0.69 29.88 0.02 19.92 16 10 O -0.55 -26.04 5.85 -118.99 -0.70 -26.73 16 11 O -0.39 -18.81 9.80 -118.29 -1.16 -19.97 16 12 C 0.04 1.45 2.39 30.62 0.07 1.52 16 13 H 0.06 2.25 7.23 -2.38 -0.02 2.24 16 14 C 0.08 2.07 6.21 71.98 0.45 2.52 16 15 O -0.59 -16.81 13.62 -144.36 -1.97 -18.78 16 16 C 0.07 1.77 3.05 30.69 0.09 1.86 16 17 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 18 O -0.55 -15.16 11.43 -124.13 -1.42 -16.58 16 19 C 0.08 2.55 3.32 30.71 0.10 2.65 16 20 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 21 O -0.54 -16.63 11.03 -128.91 -1.42 -18.05 16 22 C 0.11 4.90 2.56 30.68 0.08 4.98 16 23 H 0.04 2.15 5.73 -2.38 -0.01 2.13 16 24 O -0.53 -23.34 11.05 -124.13 -1.37 -24.71 16 25 H 0.27 16.52 8.31 -92.71 -0.77 15.75 16 26 H 0.38 16.88 9.01 -74.05 -0.67 16.21 16 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.33 7.02 -2.38 -0.02 1.32 16 29 H 0.40 6.52 9.12 -74.05 -0.68 5.84 16 30 H 0.39 7.44 7.43 -74.06 -0.55 6.89 16 31 H 0.39 6.93 9.08 -74.06 -0.67 6.25 16 32 H 0.38 12.41 9.09 -74.06 -0.67 11.74 16 Total: -1.00 -89.30 257.51 -6.76 -96.06 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: -2.20 Total: 34.37 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 1.50 Total: 1.83 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.30 Total: -61.18 kcal Atomic # 8 Polarization: -116.78 SS G_CDS: -8.03 Total: -124.81 kcal Atomic # 14 Polarization: 52.05 SS G_CDS: 1.67 Total: 53.72 kcal Total: -89.30 -6.76 -96.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169371311.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.401 kcal (2) G-P(sol) polarization free energy of solvation -89.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -303.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -310.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds