Wall clock time and date at job start Mon Mar 30 2020 07:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00016 * 2 1 4 4 H 1.48500 * 109.47130 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47315 * 300.00034 * 3 2 1 6 6 H 1.48502 * 109.47094 * 60.00315 * 3 2 1 7 7 C 1.37880 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99864 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99814 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.48074 * 60.01931 * 9 7 2 11 11 O 1.42908 * 109.48117 * 300.00184 * 9 7 2 12 12 C 1.42899 * 114.09831 * 178.86102 * 11 9 7 13 13 H 1.08999 * 109.48409 * 301.16489 * 12 11 9 14 14 C 1.53000 * 109.48297 * 181.13770 * 12 11 9 15 15 O 1.42903 * 109.46726 * 64.99813 * 14 12 11 16 16 C 1.53091 * 109.41830 * 61.15599 * 12 11 9 17 17 H 1.09000 * 109.52397 * 62.29494 * 16 12 11 18 18 O 1.42900 * 109.52681 * 182.48619 * 16 12 11 19 19 C 1.53177 * 109.16222 * 302.39276 * 16 12 11 20 20 H 1.09007 * 109.62073 * 176.88942 * 19 16 12 21 21 O 1.42899 * 109.54503 * 297.11212 * 19 16 12 22 22 C 1.53090 * 109.48073 * 180.02562 * 9 7 2 23 23 H 1.09003 * 109.51858 * 297.49525 * 22 9 7 24 24 O 1.42896 * 109.52228 * 57.68407 * 22 9 7 25 25 H 0.96995 * 119.99840 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 185.00057 * 14 12 11 27 27 H 1.09001 * 109.47194 * 305.00238 * 14 12 11 28 28 H 0.96700 * 113.99509 * 180.02562 * 15 14 12 29 29 H 0.96700 * 114.00187 * 180.02562 * 18 16 12 30 30 H 0.96694 * 114.00502 * 179.55863 * 21 19 16 31 31 H 0.96697 * 113.99974 * 299.99567 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6243 -2.5570 -0.8904 11 8 0.4298 -2.5753 1.1665 12 6 -0.3515 -3.7686 1.2533 13 1 -0.9993 -3.8433 0.3799 14 6 -1.2070 -3.7273 2.5211 15 8 -2.1541 -2.6618 2.4221 16 6 0.5787 -4.9834 1.3045 17 1 1.1988 -4.9300 2.1993 18 8 -0.2006 -6.1809 1.3329 19 6 1.4734 -4.9844 0.0611 20 1 2.1766 -5.8154 0.1168 21 8 0.6650 -5.1199 -1.1094 22 6 2.2457 -3.6629 -0.0005 23 1 2.8429 -3.6316 -0.9119 24 8 3.1033 -3.5582 1.1377 25 1 -0.4850 0.8400 -0.0004 26 1 -1.7355 -4.6740 2.6338 27 1 -0.5656 -3.5640 3.3871 28 1 -2.7314 -2.5759 3.1931 29 1 0.3252 -6.9917 1.3662 30 1 1.1668 -5.1213 -1.9360 31 1 3.6204 -2.7416 1.1667 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169371469.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:25 Heat of formation + Delta-G solvation = -272.539463 kcal Electronic energy + Delta-G solvation = -18251.748701 eV Core-core repulsion = 15111.208915 eV Total energy + Delta-G solvation = -3140.539786 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.05725 -38.01529 -37.72770 -36.75182 -36.41888 -34.66449 -31.60823 -31.07626 -28.62816 -26.23148 -24.13918 -22.69703 -21.24068 -19.01631 -18.72560 -18.43237 -17.94301 -17.93238 -16.79681 -16.26376 -16.24293 -15.91248 -15.60719 -14.83499 -14.61328 -14.42756 -14.07024 -13.79750 -13.26713 -13.07543 -12.84823 -12.67982 -12.30149 -12.11565 -11.71779 -11.52616 -11.29585 -11.06144 -10.80328 -10.69545 -10.58874 -9.63727 -8.14816 -6.39840 1.41623 1.43185 1.54956 2.38715 2.84020 3.07417 3.17769 3.23274 3.48240 3.75103 3.82032 4.06501 4.15658 4.26481 4.34399 4.42719 4.56904 4.63739 4.84014 4.96412 5.03553 5.27660 5.68815 6.03704 6.58859 6.71281 6.77037 6.87463 6.99627 7.16213 7.37938 8.92567 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.026672 B = 0.010822 C = 0.008710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.554312 B = 2586.586690 C = 3213.951288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.023 3.977 3 Si 0.967 3.033 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.191 3.809 10 H -0.018 1.018 11 O -0.360 6.360 12 C 0.088 3.912 13 H 0.021 0.979 14 C 0.096 3.904 15 O -0.586 6.586 16 C 0.105 3.895 17 H 0.085 0.915 18 O -0.562 6.562 19 C 0.085 3.915 20 H 0.093 0.907 21 O -0.561 6.561 22 C 0.056 3.944 23 H 0.067 0.933 24 O -0.564 6.564 25 H 0.260 0.740 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.390 0.610 29 H 0.395 0.605 30 H 0.392 0.608 31 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.735 -9.986 2.665 10.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.181 4.181 3 Si 0.791 3.209 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.211 1.211 7 C -0.591 4.591 8 H 0.098 0.902 9 C 0.135 3.865 10 H 0.000 1.000 11 O -0.279 6.279 12 C 0.029 3.971 13 H 0.039 0.961 14 C 0.018 3.982 15 O -0.393 6.393 16 C 0.045 3.955 17 H 0.102 0.898 18 O -0.370 6.370 19 C 0.025 3.975 20 H 0.110 0.890 21 O -0.369 6.369 22 C -0.004 4.004 23 H 0.085 0.915 24 O -0.372 6.372 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.238 0.762 29 H 0.245 0.755 30 H 0.241 0.759 31 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.651 -9.840 2.776 10.563 hybrid contribution 0.910 0.980 -0.396 1.394 sum 3.561 -8.860 2.381 9.842 Atomic orbital electron populations 1.70266 1.08017 1.27370 1.47085 1.26029 0.95502 1.03429 0.93092 0.85395 0.79500 0.78639 0.77340 1.17546 1.20637 1.21114 1.21298 0.93284 0.90477 1.54057 0.90153 1.20223 0.87941 0.93943 0.84441 0.99999 1.88365 1.58129 1.36211 1.45203 1.21731 0.91938 0.86198 0.97231 0.96118 1.22128 0.90224 0.89861 0.95947 1.86673 1.51253 1.54640 1.46708 1.22171 0.91979 0.85521 0.95793 0.89776 1.86459 1.37533 1.15817 1.97203 1.22450 0.92250 0.95781 0.86974 0.88984 1.86610 1.37680 1.95990 1.16609 1.23075 0.91986 0.95962 0.89358 0.91517 1.86152 1.59103 1.45811 1.46161 0.93081 0.90350 0.92968 0.76154 0.75499 0.75895 0.76014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.37 12.84 21.45 0.28 -55.10 16 2 C 0.02 1.31 5.40 84.65 0.46 1.77 16 3 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 4 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.55 -30.17 8.20 25.60 0.21 -29.96 16 8 H 0.08 3.95 6.80 -2.91 -0.02 3.93 16 9 C 0.19 10.00 2.14 29.88 0.06 10.06 16 10 H -0.02 -1.05 7.82 -2.39 -0.02 -1.07 16 11 O -0.36 -19.84 9.33 -133.32 -1.24 -21.08 16 12 C 0.09 4.11 2.50 30.62 0.08 4.19 16 13 H 0.02 1.12 7.82 -2.39 -0.02 1.10 16 14 C 0.10 3.81 6.65 71.98 0.48 4.29 16 15 O -0.59 -25.07 13.62 -144.35 -1.97 -27.03 16 16 C 0.10 3.84 2.70 30.68 0.08 3.92 16 17 H 0.08 2.99 7.83 -2.39 -0.02 2.97 16 18 O -0.56 -17.36 12.52 -137.90 -1.73 -19.09 16 19 C 0.08 2.93 3.22 30.72 0.10 3.03 16 20 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 21 O -0.56 -19.69 12.13 -137.90 -1.67 -21.36 16 22 C 0.06 2.25 3.01 30.69 0.09 2.34 16 23 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 24 O -0.56 -21.64 12.69 -141.88 -1.80 -23.45 16 25 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 26 H 0.08 2.66 7.62 -2.39 -0.02 2.64 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.39 11.35 9.12 -74.06 -0.68 10.67 16 29 H 0.40 7.81 9.09 -74.06 -0.67 7.13 16 30 H 0.39 9.99 9.08 -74.06 -0.67 9.32 16 31 H 0.39 14.02 7.49 -74.06 -0.55 13.46 16 Total: -1.00 -78.07 263.21 -5.93 -83.99 By element: Atomic # 1 Polarization: 39.47 SS G_CDS: -1.38 Total: 38.09 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 1.56 Total: -0.36 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.28 Total: -55.10 kcal Atomic # 8 Polarization: -103.60 SS G_CDS: -8.41 Total: -112.01 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -78.07 -5.93 -83.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169371469.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.547 kcal (2) G-P(sol) polarization free energy of solvation -78.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds