Wall clock time and date at job start Mon Mar 30 2020 07:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09005 * 109.47992 * 60.30303 * 9 7 2 11 11 O 1.42900 * 109.48408 * 300.28356 * 9 7 2 12 12 C 1.42906 * 114.09579 * 301.16925 * 11 9 7 13 13 H 1.09003 * 109.47892 * 58.83837 * 12 11 9 14 14 C 1.52997 * 109.48387 * 178.85753 * 12 11 9 15 15 O 1.42892 * 109.47080 * 295.00861 * 14 12 11 16 16 C 1.53091 * 109.41855 * 298.84535 * 12 11 9 17 17 H 1.08998 * 109.52597 * 297.70226 * 16 12 11 18 18 O 1.42901 * 109.52396 * 177.50918 * 16 12 11 19 19 C 1.53183 * 109.16067 * 57.60422 * 16 12 11 20 20 H 1.09004 * 109.54321 * 62.89350 * 19 16 12 21 21 O 1.42899 * 109.54080 * 183.15134 * 19 16 12 22 22 C 1.53093 * 109.47985 * 180.33489 * 9 7 2 23 23 H 1.09003 * 109.52499 * 182.28239 * 22 9 7 24 24 O 1.42895 * 109.52493 * 302.47108 * 22 9 7 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.46707 * 55.00148 * 14 12 11 27 27 H 1.08998 * 109.47500 * 175.00217 * 14 12 11 28 28 H 0.96708 * 113.99850 * 179.97438 * 15 14 12 29 29 H 0.96703 * 113.99970 * 179.97438 * 18 16 12 30 30 H 0.96703 * 114.00138 * 180.02562 * 21 19 16 31 31 H 0.96703 * 114.00104 * 299.99804 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6246 -2.5612 -0.8845 11 8 0.4295 -2.5698 1.1724 12 6 1.1520 -2.4710 2.4014 13 1 1.6955 -1.5266 2.4287 14 6 0.1725 -2.5300 3.5753 15 8 -0.6784 -1.3825 3.5437 16 6 2.1427 -3.6336 2.5043 17 1 1.5971 -4.5771 2.5180 18 8 2.9069 -3.5050 3.7049 19 6 3.0815 -3.6027 1.2942 20 1 3.6633 -2.6811 1.3075 21 8 3.9624 -4.7268 1.3439 22 6 2.2459 -3.6628 0.0119 23 1 1.7023 -4.6069 -0.0247 24 8 3.1066 -3.5617 -1.1242 25 1 -0.4850 0.8400 0.0004 26 1 -0.4327 -3.4333 3.4984 27 1 0.7289 -2.5441 4.5125 28 1 -1.3268 -1.3537 4.2607 29 1 3.5561 -4.2098 3.8354 30 1 4.5863 -4.7705 0.6063 31 1 2.6431 -3.5879 -1.9725 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169371470.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:26 Heat of formation + Delta-G solvation = -239.397652 kcal Electronic energy + Delta-G solvation = -18347.723386 eV Core-core repulsion = 15208.620737 eV Total energy + Delta-G solvation = -3139.102649 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.38752 -36.58316 -36.21408 -35.37714 -34.72255 -32.37896 -29.97436 -29.60248 -26.33927 -24.45130 -22.34531 -21.14592 -19.52058 -17.67555 -16.95187 -16.72824 -16.49285 -15.74616 -15.07855 -14.74592 -14.51755 -14.29518 -13.59769 -13.49325 -13.01797 -12.76223 -12.25930 -12.00894 -11.77516 -11.40034 -10.93358 -10.82720 -10.72225 -10.29523 -10.22899 -9.76186 -9.56540 -9.34331 -9.22401 -8.84060 -8.46459 -7.97756 -5.99857 -4.15914 3.30744 3.38643 3.41564 4.33090 4.36417 4.45196 4.82939 5.07098 5.14790 5.44021 5.51787 5.63730 5.83812 5.85027 5.94513 5.96937 6.06886 6.37897 6.52376 6.53348 7.01384 7.40608 7.84573 7.93997 7.99539 8.07600 8.20242 8.29881 8.69645 8.96728 9.56325 11.04321 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.013749 C = 0.010150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.932318 B = 2036.033438 C = 2757.861379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.083 3.917 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.562 4.562 8 H 0.061 0.939 9 C 0.183 3.817 10 H 0.067 0.933 11 O -0.350 6.350 12 C 0.113 3.887 13 H 0.082 0.918 14 C 0.093 3.907 15 O -0.548 6.548 16 C 0.097 3.903 17 H 0.056 0.944 18 O -0.559 6.559 19 C 0.089 3.911 20 H 0.081 0.919 21 O -0.580 6.580 22 C 0.054 3.946 23 H 0.041 0.959 24 O -0.561 6.561 25 H 0.262 0.738 26 H 0.038 0.962 27 H 0.054 0.946 28 H 0.363 0.637 29 H 0.378 0.622 30 H 0.383 0.617 31 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.477 -7.061 3.966 8.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.599 4.599 8 H 0.080 0.920 9 C 0.127 3.873 10 H 0.085 0.915 11 O -0.268 6.268 12 C 0.054 3.946 13 H 0.100 0.900 14 C 0.015 3.985 15 O -0.350 6.350 16 C 0.038 3.962 17 H 0.074 0.926 18 O -0.364 6.364 19 C 0.030 3.970 20 H 0.099 0.901 21 O -0.386 6.386 22 C -0.005 4.005 23 H 0.059 0.941 24 O -0.367 6.367 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.207 0.793 29 H 0.225 0.775 30 H 0.231 0.769 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.203 -6.395 4.499 8.124 hybrid contribution 0.627 0.348 -0.659 0.974 sum 2.831 -6.047 3.840 7.702 Atomic orbital electron populations 1.70033 1.05798 1.26652 1.45635 1.25004 0.94678 0.99065 0.93740 0.86685 0.80089 0.83703 0.78051 1.20613 1.21072 1.19820 1.21302 0.93207 0.90311 1.55080 0.92049 1.20458 0.88754 0.91885 0.86212 0.91507 1.88076 1.33717 1.93037 1.12009 1.21381 0.90742 0.96309 0.86213 0.89977 1.22053 0.91834 0.87941 0.96637 1.86785 1.50406 1.44348 1.53511 1.22456 0.91278 0.99830 0.82684 0.92590 1.86431 1.54949 1.53854 1.41199 1.22573 0.91319 0.89360 0.93723 0.90114 1.86233 1.51566 1.48708 1.52130 1.23217 0.92340 0.98779 0.86211 0.94067 1.86285 1.36982 1.97168 1.16232 0.92842 0.94367 0.92793 0.79254 0.77490 0.76931 0.77662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.76 12.83 55.43 0.71 -24.05 16 2 C 0.08 2.31 5.40 -17.82 -0.10 2.21 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.56 -15.12 6.23 -34.44 -0.21 -15.34 16 8 H 0.06 1.68 6.76 -52.49 -0.35 1.33 16 9 C 0.18 4.53 2.90 -27.83 -0.08 4.45 16 10 H 0.07 1.75 8.14 -51.93 -0.42 1.32 16 11 O -0.35 -8.92 9.59 -40.07 -0.38 -9.31 16 12 C 0.11 2.56 2.38 -26.69 -0.06 2.50 16 13 H 0.08 2.16 7.09 -51.93 -0.37 1.79 16 14 C 0.09 1.82 6.65 37.16 0.25 2.06 16 15 O -0.55 -11.34 13.62 -40.07 -0.55 -11.88 16 16 C 0.10 1.90 2.78 -26.59 -0.07 1.83 16 17 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 18 O -0.56 -9.87 12.68 -41.48 -0.53 -10.40 16 19 C 0.09 1.78 2.68 -26.55 -0.07 1.70 16 20 H 0.08 1.81 6.85 -51.93 -0.36 1.46 16 21 O -0.58 -9.97 12.94 -51.77 -0.67 -10.64 16 22 C 0.05 1.12 2.99 -26.60 -0.08 1.04 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 O -0.56 -10.69 12.42 -41.49 -0.52 -11.20 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.05 0.94 7.62 -51.93 -0.40 0.54 16 28 H 0.36 5.17 9.12 45.56 0.42 5.59 16 29 H 0.38 5.27 8.72 45.56 0.40 5.67 16 30 H 0.38 5.60 8.73 45.56 0.40 6.00 16 31 H 0.38 5.89 9.08 45.56 0.41 6.30 16 LS Contribution 261.80 15.07 3.95 3.95 Total: -1.00 -33.15 261.80 -4.11 -37.26 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -0.68 Total: 19.20 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.43 Total: 0.46 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.71 Total: -24.05 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -2.64 Total: -53.44 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.15 -4.11 -37.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169371470.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.133 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds