Wall clock time and date at job start Mon Mar 30 2020 07:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37522 * 125.98092 * 2 1 4 4 C 1.33583 * 107.89183 * 180.02562 * 3 2 1 5 5 N 1.37520 * 107.89666 * 0.02562 * 4 3 2 6 6 C 1.46500 * 125.98299 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.46998 * 90.02112 * 6 5 4 8 8 C 1.52999 * 109.46626 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46957 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99816 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00340 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99773 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00296 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47118 * 89.99310 * 13 11 9 15 15 H 1.48494 * 109.47201 * 209.99478 * 13 11 9 16 16 H 1.48498 * 109.47011 * 329.99452 * 13 11 9 17 17 C 1.34671 * 108.03764 * 0.25742 * 5 4 3 18 18 C 1.41687 * 125.93702 * 179.73613 * 17 5 4 19 19 N 1.30229 * 120.00432 * 180.02562 * 18 17 5 20 20 O 1.21800 * 120.00116 * 180.02562 * 19 18 17 21 21 H 1.09004 * 109.47007 * 359.97351 * 1 2 3 22 22 H 1.08999 * 109.47495 * 119.97513 * 1 2 3 23 23 H 1.09002 * 109.47076 * 239.97362 * 1 2 3 24 24 H 1.08005 * 126.05106 * 0.03883 * 3 2 1 25 25 H 1.08006 * 126.05344 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.47175 * 330.02244 * 6 5 4 27 27 H 1.09001 * 109.47297 * 210.01751 * 6 5 4 28 28 H 1.08993 * 109.46955 * 300.00226 * 7 6 5 29 29 H 1.09000 * 109.47050 * 60.00054 * 7 6 5 30 30 H 1.08993 * 109.47839 * 299.99931 * 8 7 6 31 31 H 1.09000 * 109.47160 * 60.00369 * 8 7 6 32 32 H 0.97000 * 120.00540 * 180.02562 * 12 11 9 33 33 H 1.08002 * 119.99620 * 0.02562 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2730 1.1128 0.0000 4 6 3.5428 0.6981 -0.0006 5 7 3.5382 -0.6771 -0.0015 6 6 4.7208 -1.5418 -0.0018 7 6 5.1318 -1.8443 1.4406 8 6 6.3665 -2.7479 1.4402 9 6 6.7710 -3.0464 2.8609 10 1 6.2039 -2.6332 3.6819 11 6 7.8650 -3.8468 3.1126 12 7 8.5553 -4.3503 2.1128 13 14 8.3660 -4.2173 4.8736 14 1 7.6723 -5.4456 5.3376 15 1 9.8351 -4.4245 4.9371 16 1 7.9888 -3.0764 5.7460 17 6 2.2563 -1.0898 -0.0073 18 6 1.8163 -2.4366 -0.0153 19 7 0.5421 -2.7054 -0.0208 20 8 0.1639 -3.8632 -0.0273 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5134 -0.8902 23 1 -0.3633 -0.5143 0.8898 24 1 1.9398 2.1402 0.0006 25 1 4.4182 1.3307 -0.0011 26 1 5.5396 -1.0374 -0.5148 27 1 4.4890 -2.4743 -0.5166 28 1 5.3635 -0.9120 1.9554 29 1 4.3130 -2.3487 1.9536 30 1 6.1343 -3.6802 0.9255 31 1 7.1855 -2.2438 0.9271 32 1 9.3248 -4.9138 2.2897 33 1 2.5378 -3.2403 -0.0169 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000209126347.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:36 Heat of formation + Delta-G solvation = 37.093847 kcal Electronic energy + Delta-G solvation = -16304.712692 eV Core-core repulsion = 13560.296989 eV Total energy + Delta-G solvation = -2744.415702 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.03793 -39.24541 -37.74405 -35.71421 -34.08204 -33.34292 -30.70894 -29.21975 -27.98783 -25.45388 -24.27059 -23.10009 -22.31749 -20.77532 -18.86018 -18.24565 -17.53545 -17.39528 -16.58597 -16.47901 -15.93450 -15.82357 -15.35239 -15.01842 -14.73436 -14.60594 -14.30647 -13.73395 -13.59661 -13.32091 -12.84696 -12.77350 -12.60383 -12.51578 -11.75442 -11.71945 -11.43910 -11.04266 -10.79413 -10.59837 -9.23833 -8.56899 -8.25173 -6.35682 -0.06484 0.80191 1.01677 1.37679 1.40050 1.49356 1.80518 2.19683 2.37798 3.09450 3.42135 3.44567 3.62939 3.89900 3.96106 4.24603 4.29408 4.31248 4.33299 4.55894 4.62821 4.71476 4.78925 4.89129 5.02180 5.32826 5.43155 5.55066 5.60806 5.75293 5.77356 5.91694 6.17273 6.79840 7.33998 8.18572 8.86107 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028805 B = 0.005232 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.832289 B = 5350.170764 C = 5849.667156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.431 5.431 3 C 0.005 3.995 4 C -0.003 4.003 5 N -0.432 5.432 6 C 0.113 3.887 7 C -0.108 4.108 8 C 0.027 3.973 9 C -0.547 4.547 10 H 0.055 0.945 11 C 0.005 3.995 12 N -0.928 5.928 13 Si 0.959 3.041 14 H -0.280 1.280 15 H -0.278 1.278 16 H -0.262 1.262 17 C 0.417 3.583 18 C -0.264 4.264 19 N -0.256 5.256 20 O -0.374 6.374 21 H 0.151 0.849 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.258 0.742 25 H 0.244 0.756 26 H 0.141 0.859 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.034 0.966 30 H -0.009 1.009 31 H 0.016 0.984 32 H 0.265 0.735 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.544 21.111 -5.460 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.114 5.114 3 C -0.121 4.121 4 C -0.129 4.129 5 N -0.115 5.115 6 C -0.006 4.006 7 C -0.146 4.146 8 C -0.010 4.010 9 C -0.585 4.585 10 H 0.074 0.926 11 C -0.193 4.193 12 N -0.568 5.568 13 Si 0.784 3.216 14 H -0.206 1.206 15 H -0.203 1.203 16 H -0.186 1.186 17 C 0.170 3.830 18 C -0.438 4.438 19 N 0.103 4.897 20 O -0.575 6.575 21 H 0.169 0.831 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.274 0.726 25 H 0.260 0.740 26 H 0.159 0.841 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.009 0.991 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.963 21.850 -5.501 24.249 hybrid contribution 1.178 -1.944 0.844 2.424 sum -7.785 19.906 -4.657 21.876 Atomic orbital electron populations 1.22491 0.71410 1.07027 1.04495 1.44705 1.09830 1.04428 1.52467 1.23470 0.87306 0.94518 1.06782 1.23424 1.01673 0.80895 1.06911 1.44829 1.04848 1.09014 1.52801 1.22371 0.83968 0.94703 0.99588 1.21762 0.98170 1.00675 0.93983 1.18917 0.92428 0.93762 0.95931 1.21610 1.12415 1.30735 0.93702 0.92630 1.25869 0.96483 0.95532 1.01438 1.70051 1.19603 1.34251 1.32904 0.85537 0.77487 0.78761 0.79843 1.20557 1.20337 1.18621 1.18365 0.81985 0.88540 0.94142 1.22372 0.97117 0.90724 1.33586 1.71134 1.11960 1.16495 0.90116 1.93649 1.82555 1.18435 1.62861 0.83131 0.90406 0.90865 0.72560 0.73970 0.84130 0.89691 0.90523 0.94663 0.99050 0.96549 0.92637 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.24 9.67 127.77 1.24 2.48 16 2 N -0.43 -7.59 3.15 -544.93 -1.71 -9.31 16 3 C 0.01 0.04 11.43 82.74 0.95 0.98 16 4 C 0.00 -0.03 11.47 82.74 0.95 0.92 16 5 N -0.43 -9.37 2.74 -521.54 -1.43 -10.80 16 6 C 0.11 2.96 5.85 86.38 0.51 3.46 16 7 C -0.11 -3.84 5.48 30.60 0.17 -3.67 16 8 C 0.03 1.31 4.97 29.85 0.15 1.46 16 9 C -0.55 -29.97 9.11 25.60 0.23 -29.74 16 10 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 11 C 0.01 0.30 5.46 84.65 0.46 0.76 16 12 N -0.93 -54.75 13.29 21.45 0.28 -54.46 16 13 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 14 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 16 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 17 C 0.42 11.58 7.44 134.42 1.00 12.58 16 18 C -0.26 -10.75 10.34 85.78 0.89 -9.86 16 19 N -0.26 -11.60 9.11 -56.12 -0.51 -12.11 16 20 O -0.37 -20.21 19.35 -5.23 -0.10 -20.31 16 21 H 0.15 0.40 8.08 -2.38 -0.02 0.38 16 22 H 0.08 1.45 7.78 -2.39 -0.02 1.44 16 23 H 0.07 1.44 7.83 -2.39 -0.02 1.43 16 24 H 0.26 -1.29 8.06 -2.91 -0.02 -1.31 16 25 H 0.24 0.25 8.06 -2.91 -0.02 0.23 16 26 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.08 2.56 7.24 -2.39 -0.02 2.54 16 28 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 30 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 33 H 0.08 3.85 7.27 -2.91 -0.02 3.83 16 Total: -1.00 -90.07 290.77 6.17 -83.89 By element: Atomic # 1 Polarization: -2.99 SS G_CDS: 1.09 Total: -1.90 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 6.53 Total: -20.62 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -3.37 Total: -86.68 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.10 Total: -20.31 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -90.07 6.17 -83.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000209126347.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.987 kcal (2) G-P(sol) polarization free energy of solvation -90.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds