Wall clock time and date at job start Mon Mar 30 2020 07:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37524 * 125.97808 * 2 1 4 4 C 1.33599 * 107.89261 * 179.78828 * 3 2 1 5 5 N 1.37528 * 107.88811 * 0.38791 * 4 3 2 6 6 C 1.46499 * 125.97593 * 179.86533 * 5 4 3 7 7 C 1.53004 * 109.47270 * 269.69332 * 6 5 4 8 8 C 1.50699 * 109.46843 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00516 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99783 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99707 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99956 * 180.27458 * 10 8 7 13 13 H 1.48497 * 109.47172 * 179.72730 * 12 10 8 14 14 H 1.48506 * 109.47132 * 299.72429 * 12 10 8 15 15 H 1.48501 * 109.47173 * 59.72550 * 12 10 8 16 16 C 1.34672 * 125.98187 * 180.02562 * 2 1 3 17 17 C 1.41683 * 125.93345 * 359.96799 * 16 2 1 18 18 N 1.30243 * 119.99791 * 0.02562 * 17 16 2 19 19 O 1.21802 * 119.99768 * 179.97438 * 18 17 16 20 20 H 1.09000 * 109.47333 * 269.95812 * 1 2 3 21 21 H 1.09004 * 109.46803 * 29.96369 * 1 2 3 22 22 H 1.08996 * 109.46742 * 149.95723 * 1 2 3 23 23 H 1.07996 * 126.05465 * 0.04868 * 3 2 1 24 24 H 1.07998 * 126.05426 * 180.24321 * 4 3 2 25 25 H 1.09006 * 109.46638 * 149.69622 * 6 5 4 26 26 H 1.08997 * 109.47029 * 29.69729 * 6 5 4 27 27 H 1.09001 * 109.46361 * 60.00590 * 7 6 5 28 28 H 1.08997 * 109.46991 * 300.00480 * 7 6 5 29 29 H 0.97005 * 119.99656 * 179.97438 * 11 10 8 30 30 H 1.07999 * 120.00545 * 179.97438 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2729 1.1129 0.0000 4 6 3.5429 0.6982 0.0047 5 7 3.5382 -0.6771 -0.0012 6 6 4.7208 -1.5417 -0.0016 7 6 5.1319 -1.8429 -1.4443 8 6 6.3481 -2.7328 -1.4447 9 1 6.7844 -3.0515 -0.5095 10 6 6.9044 -3.1395 -2.6390 11 7 6.3739 -2.7502 -3.7777 12 14 8.4072 -4.2488 -2.6395 13 1 8.8035 -4.5449 -4.0397 14 1 9.5266 -3.5662 -1.9421 15 1 8.0864 -5.5173 -1.9371 16 6 2.2562 -1.0898 -0.0005 17 6 1.8164 -2.4366 -0.0004 18 7 0.5420 -2.7055 -0.0004 19 8 0.1639 -3.8633 -0.0008 20 1 -0.3634 -0.0008 1.0276 21 1 -0.3633 0.8904 -0.5133 22 1 -0.3633 -0.8896 -0.5145 23 1 1.9398 2.1402 0.0007 24 1 4.4181 1.3308 0.0096 25 1 4.4889 -2.4746 0.5123 26 1 5.5395 -1.0378 0.5119 27 1 5.3638 -0.9099 -1.9582 28 1 4.3131 -2.3468 -1.9578 29 1 6.7655 -3.0360 -4.6179 30 1 2.5378 -3.2403 -0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000209127133.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:04 Heat of formation + Delta-G solvation = 43.492972 kcal Electronic energy + Delta-G solvation = -14889.911774 eV Core-core repulsion = 12301.311178 eV Total energy + Delta-G solvation = -2588.600596 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.98996 -39.25914 -37.49115 -35.31627 -33.85951 -32.47403 -30.05030 -28.79531 -26.78483 -24.30497 -23.84803 -22.68253 -20.74323 -18.97967 -18.19547 -17.50157 -17.37005 -16.56658 -16.37718 -15.86707 -15.54817 -15.08310 -14.86292 -14.76039 -14.38643 -14.17754 -13.68155 -13.40008 -12.89116 -12.70645 -12.52660 -12.13118 -12.06938 -11.52694 -11.03235 -10.78338 -10.64688 -9.22194 -8.53389 -8.30318 -6.43667 -0.02589 0.87793 1.03464 1.39790 1.43493 1.50395 1.86210 2.21536 2.36693 3.05732 3.47997 3.53491 3.66674 4.02316 4.25031 4.31356 4.34279 4.36055 4.54303 4.65335 4.71235 4.84134 5.23536 5.33949 5.38827 5.54438 5.69175 5.80742 5.94774 6.01944 6.71738 7.27815 8.20590 8.81324 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.031673 B = 0.007067 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.830925 B = 3960.946842 C = 4522.870809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.431 5.431 3 C 0.004 3.996 4 C -0.006 4.006 5 N -0.432 5.432 6 C 0.121 3.879 7 C 0.021 3.979 8 C -0.547 4.547 9 H 0.075 0.925 10 C 0.005 3.995 11 N -0.930 5.930 12 Si 0.967 3.033 13 H -0.287 1.287 14 H -0.256 1.256 15 H -0.272 1.272 16 C 0.415 3.585 17 C -0.265 4.265 18 N -0.255 5.255 19 O -0.371 6.371 20 H 0.097 0.903 21 H 0.139 0.861 22 H 0.080 0.920 23 H 0.259 0.741 24 H 0.240 0.760 25 H 0.082 0.918 26 H 0.135 0.865 27 H 0.015 0.985 28 H -0.021 1.021 29 H 0.265 0.735 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.239 16.537 8.662 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.114 5.114 3 C -0.122 4.122 4 C -0.133 4.133 5 N -0.115 5.115 6 C 0.002 3.998 7 C -0.016 4.016 8 C -0.585 4.585 9 H 0.093 0.907 10 C -0.194 4.194 11 N -0.570 5.570 12 Si 0.791 3.209 13 H -0.212 1.212 14 H -0.180 1.180 15 H -0.198 1.198 16 C 0.168 3.832 17 C -0.439 4.439 18 N 0.105 4.895 19 O -0.573 6.573 20 H 0.116 0.884 21 H 0.157 0.843 22 H 0.099 0.901 23 H 0.275 0.725 24 H 0.256 0.744 25 H 0.101 0.899 26 H 0.153 0.847 27 H 0.033 0.967 28 H -0.002 1.002 29 H 0.074 0.926 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.781 17.361 8.488 19.691 hybrid contribution 1.351 -1.912 -0.574 2.410 sum -2.430 15.449 7.914 17.527 Atomic orbital electron populations 1.22723 0.71432 1.06962 1.05938 1.44683 1.09841 1.04264 1.52637 1.23415 0.87218 0.94574 1.07001 1.23389 1.01671 0.81152 1.07093 1.45020 1.05252 1.09129 1.52057 1.22403 0.83071 0.93838 1.00474 1.19240 0.95297 0.96494 0.90601 1.21419 1.12438 1.31213 0.93447 0.90661 1.25959 1.00759 0.97583 0.95131 1.70086 1.42310 1.46361 0.98199 0.85457 0.79139 0.79038 0.77216 1.21247 1.17987 1.19766 1.18405 0.81980 0.88638 0.94197 1.22343 0.97064 0.90682 1.33765 1.71055 1.11708 1.16311 0.90390 1.93627 1.82448 1.18486 1.62711 0.88423 0.84264 0.90104 0.72487 0.74394 0.89940 0.84681 0.96651 1.00247 0.92600 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 10.46 127.77 1.34 2.61 16 2 N -0.43 -9.84 3.15 -544.95 -1.71 -11.55 16 3 C 0.00 0.05 11.47 82.75 0.95 1.00 16 4 C -0.01 -0.11 11.47 82.75 0.95 0.84 16 5 N -0.43 -12.54 2.75 -521.54 -1.43 -13.97 16 6 C 0.12 4.13 5.78 86.38 0.50 4.63 16 7 C 0.02 1.02 5.30 29.85 0.16 1.18 16 8 C -0.55 -28.49 9.11 25.60 0.23 -28.26 16 9 H 0.08 3.62 7.74 -2.91 -0.02 3.59 16 10 C 0.00 0.26 5.46 84.66 0.46 0.72 16 11 N -0.93 -54.87 13.29 21.45 0.28 -54.59 16 12 Si 0.97 42.34 29.54 68.60 2.03 44.36 16 13 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 14 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 16 C 0.42 14.08 7.44 134.42 1.00 15.08 16 17 C -0.26 -12.20 10.34 85.78 0.89 -11.32 16 18 N -0.25 -12.52 8.51 -56.11 -0.48 -12.99 16 19 O -0.37 -21.19 19.35 -5.24 -0.10 -21.29 16 20 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.14 1.15 8.14 -2.38 -0.02 1.13 16 22 H 0.08 2.27 5.96 -2.39 -0.01 2.25 16 23 H 0.26 -0.03 8.06 -2.91 -0.02 -0.06 16 24 H 0.24 1.88 8.06 -2.91 -0.02 1.86 16 25 H 0.08 3.03 7.25 -2.38 -0.02 3.02 16 26 H 0.14 3.56 8.14 -2.39 -0.02 3.54 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 29 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 30 H 0.08 4.21 7.28 -2.91 -0.02 4.19 16 Total: -1.00 -87.61 268.08 6.19 -81.42 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: 1.13 Total: 2.11 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 6.47 Total: -13.50 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -3.34 Total: -93.11 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.10 Total: -21.29 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -87.61 6.19 -81.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000209127133.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.916 kcal (2) G-P(sol) polarization free energy of solvation -87.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds