Wall clock time and date at job start Mon Mar 30 2020 07:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86804 * 119.99767 * 2 1 4 4 H 1.48495 * 109.47187 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46775 * 120.00506 * 3 2 1 6 6 H 1.48502 * 109.46979 * 240.00212 * 3 2 1 7 7 C 1.39889 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99681 * 206.52205 * 7 2 1 9 9 C 1.41081 * 119.99949 * 26.52702 * 7 2 1 10 10 C 1.40781 * 120.24807 * 25.34362 * 9 7 2 11 11 C 1.36546 * 119.94975 * 179.97438 * 10 9 7 12 12 F 1.35102 * 119.76174 * 180.02562 * 11 10 9 13 13 C 1.39328 * 120.47066 * 359.97438 * 11 10 9 14 14 F 1.35098 * 119.75462 * 180.02562 * 13 11 10 15 15 C 1.38623 * 120.49926 * 0.02562 * 13 11 10 16 16 Br 1.89103 * 119.98409 * 179.97438 * 15 13 11 17 17 C 1.38403 * 120.03303 * 359.74111 * 15 13 11 18 18 O 1.35698 * 120.23367 * 180.27185 * 17 15 13 19 19 H 0.96997 * 120.00296 * 185.89022 * 1 2 3 20 20 H 1.08002 * 120.01818 * 359.95785 * 10 9 7 21 21 H 0.96698 * 114.00210 * 270.21729 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 1.2780 2.7465 0.0006 5 1 3.0968 1.6964 1.2124 6 1 3.0967 1.6965 -1.2125 7 6 2.0085 -1.2115 -0.0005 8 1 3.0032 -1.2608 0.4171 9 6 1.4144 -2.3687 -0.5467 10 6 0.4155 -2.2554 -1.5322 11 6 -0.1550 -3.3795 -2.0570 12 9 -1.1130 -3.2663 -3.0029 13 6 0.2446 -4.6423 -1.6248 14 9 -0.3292 -5.7448 -2.1544 15 6 1.2265 -4.7760 -0.6555 16 35 1.7573 -6.4971 -0.0791 17 6 1.8221 -3.6507 -0.1129 18 8 2.7876 -3.7771 0.8322 19 1 -0.4850 -0.8356 0.0862 20 1 0.1004 -1.2800 -1.8725 21 1 2.4508 -3.7958 1.7385 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217592168.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:01 Heat of formation + Delta-G solvation = -140.046293 kcal Electronic energy + Delta-G solvation = -14091.285228 eV Core-core repulsion = 11034.428026 eV Total energy + Delta-G solvation = -3056.857201 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 277.949 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.28159 -49.31653 -40.33407 -37.33931 -35.91608 -32.86808 -30.90620 -29.68802 -27.17064 -23.57684 -23.31593 -20.25779 -19.42155 -18.41664 -18.05399 -17.30390 -16.96666 -15.91942 -15.82672 -15.57133 -15.52502 -14.83927 -14.78082 -14.38616 -13.41964 -13.12535 -12.76707 -12.47791 -12.07549 -11.91341 -11.75794 -11.42605 -11.28195 -10.95259 -9.77043 -9.68321 -9.34747 -6.73585 0.08147 0.20755 0.50700 1.51954 1.56621 1.83768 2.20326 2.27589 2.94987 3.07724 3.42473 3.70177 4.16455 4.33919 4.74150 4.86908 5.11268 5.26510 5.49924 5.69698 5.83266 6.20197 6.49896 6.96446 7.75624 Molecular weight = 277.95amu Principal moments of inertia in cm(-1) A = 0.027115 B = 0.007867 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.378546 B = 3558.224221 C = 4477.493809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.007 3.993 3 Si 1.117 2.883 4 H -0.271 1.271 5 H -0.250 1.250 6 H -0.262 1.262 7 C -0.478 4.478 8 H 0.101 0.899 9 C 0.067 3.933 10 C -0.236 4.236 11 C 0.110 3.890 12 F -0.147 7.147 13 C -0.081 4.081 14 F -0.146 7.146 15 C -0.075 4.075 16 Br -0.026 7.026 17 C 0.023 3.977 18 O -0.475 6.475 19 H 0.291 0.709 20 H 0.125 0.875 21 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.290 -3.719 2.655 5.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.214 4.214 3 Si 0.932 3.068 4 H -0.196 1.196 5 H -0.174 1.174 6 H -0.187 1.187 7 C -0.503 4.503 8 H 0.119 0.881 9 C 0.061 3.939 10 C -0.256 4.256 11 C 0.089 3.911 12 F -0.126 7.126 13 C -0.104 4.104 14 F -0.125 7.125 15 C -0.156 4.156 16 Br 0.059 6.941 17 C -0.025 4.025 18 O -0.284 6.284 19 H 0.104 0.896 20 H 0.143 0.857 21 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.534 -2.802 2.295 5.060 hybrid contribution -0.921 -1.746 -0.101 1.976 sum 2.613 -4.548 2.194 5.685 Atomic orbital electron populations 1.70620 1.09053 1.34099 1.26242 1.28691 0.95425 1.07770 0.89547 0.82986 0.74855 0.69232 0.79689 1.19574 1.17379 1.18681 1.20917 1.03892 0.93510 1.31979 0.88098 1.17876 0.91212 0.92964 0.91826 1.20648 1.05886 0.96422 1.02656 1.17139 0.90346 0.93008 0.90627 1.91399 1.61704 1.96925 1.62535 1.16484 1.05386 0.81409 1.07104 1.91357 1.84082 1.51149 1.85933 1.21892 0.99812 0.92406 1.01503 1.96509 1.90811 1.17651 1.89088 1.17790 0.97397 0.89500 0.97842 1.84714 1.30933 1.95091 1.17696 0.89574 0.85748 0.75729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.33 12.32 21.82 0.27 -36.06 14 2 C 0.01 0.29 4.91 85.23 0.42 0.71 14 3 Si 1.12 36.24 30.01 68.60 2.06 38.30 14 4 H -0.27 -8.84 7.11 99.48 0.71 -8.13 14 5 H -0.25 -7.30 7.11 99.48 0.71 -6.60 14 6 H -0.26 -8.21 7.11 99.48 0.71 -7.50 14 7 C -0.48 -21.70 8.63 23.37 0.20 -21.49 14 8 H 0.10 4.44 7.72 -2.91 -0.02 4.42 14 9 C 0.07 3.14 5.30 -21.19 -0.11 3.02 14 10 C -0.24 -11.25 7.89 22.50 0.18 -11.07 14 11 C 0.11 5.16 7.25 22.14 0.16 5.32 14 12 F -0.15 -6.71 17.16 44.97 0.77 -5.94 14 13 C -0.08 -3.73 7.29 22.62 0.16 -3.56 14 14 F -0.15 -6.55 16.61 44.97 0.75 -5.80 14 15 C -0.08 -3.26 6.24 22.40 0.14 -3.12 14 16 Br -0.03 -0.92 32.72 -20.37 -0.67 -1.59 14 17 C 0.02 1.02 6.73 23.07 0.16 1.18 14 18 O -0.47 -18.38 12.13 -90.17 -1.09 -19.47 14 19 H 0.29 14.14 6.79 -92.71 -0.63 13.51 14 20 H 0.12 6.07 6.52 -2.91 -0.02 6.05 14 21 H 0.39 11.86 9.06 -74.06 -0.67 11.18 14 Total: -1.00 -50.81 226.58 4.17 -46.64 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.78 Total: 12.93 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 1.31 Total: -29.02 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.27 Total: -36.06 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -1.09 Total: -19.47 kcal Atomic # 9 Polarization: -13.25 SS G_CDS: 1.52 Total: -11.74 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.06 Total: 38.30 kcal Atomic # 35 Polarization: -0.92 SS G_CDS: -0.67 Total: -1.59 kcal Total: -50.81 4.17 -46.64 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217592168.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.409 kcal (2) G-P(sol) polarization free energy of solvation -50.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds