Wall clock time and date at job start Mon Mar 30 2020 07:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86808 * 119.99909 * 2 1 4 4 H 1.48499 * 109.47098 * 85.18334 * 3 2 1 5 5 H 1.48496 * 109.47133 * 205.18763 * 3 2 1 6 6 H 1.48499 * 109.46703 * 325.18780 * 3 2 1 7 7 C 1.39936 * 120.00435 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00358 * 196.95727 * 7 2 1 9 9 C 1.41350 * 119.99742 * 16.95395 * 7 2 1 10 10 C 1.40748 * 120.23551 * 25.45870 * 9 7 2 11 11 C 1.37649 * 119.79525 * 179.69162 * 10 9 7 12 12 Br 1.89102 * 119.85410 * 180.31865 * 11 10 9 13 13 C 1.38760 * 120.28810 * 0.60414 * 11 10 9 14 14 C 1.38727 * 120.49081 * 359.67335 * 13 11 10 15 15 F 1.35099 * 119.90471 * 180.02562 * 14 13 11 16 16 C 1.38044 * 120.19086 * 0.02562 * 14 13 11 17 17 Cl 1.73594 * 120.14654 * 179.97438 * 16 14 13 18 18 H 0.96999 * 120.00158 * 0.02562 * 1 2 3 19 19 H 1.08000 * 120.10068 * 359.97438 * 10 9 7 20 20 H 1.08009 * 119.75800 * 179.68936 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.3881 2.1053 1.3951 5 1 3.5871 1.4131 -0.5958 6 1 1.4943 2.6212 -0.7993 7 6 2.0082 -1.2118 -0.0005 8 1 3.0529 -1.2323 0.2722 9 6 1.3475 -2.4092 -0.3580 10 6 0.2181 -2.3722 -1.1971 11 6 -0.4145 -3.5443 -1.5446 12 35 -1.9267 -3.4973 -2.6791 13 6 0.0490 -4.7596 -1.0614 14 6 1.1577 -4.8095 -0.2290 15 9 1.5992 -5.9993 0.2343 16 6 1.8111 -3.6468 0.1273 17 17 3.1979 -3.7105 1.1696 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1484 -1.4275 -1.5707 20 1 -0.4569 -5.6737 -1.3355 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217616874.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:37 Heat of formation + Delta-G solvation = -46.819461 kcal Electronic energy + Delta-G solvation = -11884.669987 eV Core-core repulsion = 9260.191779 eV Total energy + Delta-G solvation = -2624.478207 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -48.00217 -37.75943 -35.26493 -34.05529 -31.17495 -29.73722 -27.99289 -25.80412 -21.58473 -21.03401 -17.87952 -16.06055 -15.63385 -15.22986 -14.91979 -14.74468 -13.38409 -12.96630 -12.65568 -12.22913 -11.73896 -11.41797 -11.24931 -11.05786 -10.95667 -10.63629 -10.21500 -9.70020 -9.59913 -9.53424 -9.33294 -7.84040 -7.52735 -7.15235 -4.79816 2.12221 2.34202 2.44946 2.90837 2.92277 2.99200 3.40293 3.68901 4.12368 5.04740 5.31708 5.96681 6.35184 6.43115 6.75625 6.86961 6.94582 7.31954 7.40312 7.65961 8.07271 8.32093 8.39544 9.77162 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.010097 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.674382 B = 2772.320802 C = 4437.836496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.074 3.926 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.255 1.255 6 H -0.271 1.271 7 C -0.427 4.427 8 H 0.097 0.903 9 C 0.134 3.866 10 C -0.129 4.129 11 C -0.034 4.034 12 Br -0.089 7.089 13 C -0.256 4.256 14 C 0.143 3.857 15 F -0.150 7.150 16 C -0.173 4.173 17 Cl -0.093 7.093 18 H 0.290 0.710 19 H 0.141 0.859 20 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 -1.194 -3.242 3.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.148 4.148 3 Si 0.740 3.260 4 H -0.190 1.190 5 H -0.179 1.179 6 H -0.196 1.196 7 C -0.454 4.454 8 H 0.115 0.885 9 C 0.129 3.871 10 C -0.151 4.151 11 C -0.113 4.113 12 Br -0.004 7.004 13 C -0.278 4.278 14 C 0.122 3.878 15 F -0.128 7.128 16 C -0.202 4.202 17 Cl -0.064 7.064 18 H 0.102 0.898 19 H 0.159 0.841 20 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.532 -1.059 -3.540 4.479 hybrid contribution 0.728 0.437 0.491 0.981 sum -1.803 -0.621 -3.049 3.597 Atomic orbital electron populations 1.69780 1.07822 1.30565 1.31156 1.26080 0.94885 1.02079 0.91774 0.86118 0.80816 0.79483 0.79574 1.19045 1.17883 1.19576 1.19773 0.98571 0.90137 1.36895 0.88546 1.17150 0.90528 0.90563 0.88905 1.21349 0.97796 0.96252 0.99677 1.21094 0.94477 0.95830 0.99905 1.96471 1.39712 1.99307 1.64944 1.20006 1.01631 0.96973 1.09187 1.16981 0.94779 0.78992 0.97076 1.91395 1.89038 1.44967 1.87437 1.20799 0.97781 0.94065 1.07600 1.98224 1.42798 1.98666 1.66753 0.89830 0.84126 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.83 10.97 55.55 0.61 -17.22 14 2 C 0.07 1.65 5.15 -17.34 -0.09 1.57 14 3 Si 0.92 16.91 29.59 -169.99 -5.03 11.88 14 4 H -0.27 -4.88 7.11 56.52 0.40 -4.47 14 5 H -0.26 -4.70 7.11 56.52 0.40 -4.30 14 6 H -0.27 -4.87 7.11 56.52 0.40 -4.47 14 7 C -0.43 -10.23 8.51 -37.76 -0.32 -10.56 14 8 H 0.10 2.26 7.13 -52.49 -0.37 1.88 14 9 C 0.13 3.28 5.57 -106.80 -0.59 2.69 14 10 C -0.13 -3.07 8.41 -38.85 -0.33 -3.39 14 11 C -0.03 -0.74 6.21 -39.60 -0.25 -0.98 14 12 Br -0.09 -1.64 33.69 -68.01 -2.29 -3.93 14 13 C -0.26 -5.57 9.76 -39.21 -0.38 -5.95 14 14 C 0.14 3.25 7.26 -39.47 -0.29 2.96 14 15 F -0.15 -3.26 16.82 2.25 0.04 -3.22 14 16 C -0.17 -4.12 6.38 -38.69 -0.25 -4.37 14 17 Cl -0.09 -2.01 27.25 -51.86 -1.41 -3.42 14 18 H 0.29 6.05 8.30 -40.82 -0.34 5.71 14 19 H 0.14 3.39 6.20 -52.49 -0.33 3.06 14 20 H 0.12 2.34 8.06 -52.48 -0.42 1.91 14 LS Contribution 226.59 15.07 3.41 3.41 Total: -1.00 -23.78 226.59 -7.42 -31.21 By element: Atomic # 1 Polarization: -0.41 SS G_CDS: -0.26 Total: -0.67 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -2.49 Total: -18.03 kcal Atomic # 7 Polarization: -17.83 SS G_CDS: 0.61 Total: -17.22 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.04 Total: -3.22 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -1.41 Total: -3.42 kcal Atomic # 35 Polarization: -1.64 SS G_CDS: -2.29 Total: -3.93 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -23.78 -7.42 -31.21 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217616874.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.613 kcal (2) G-P(sol) polarization free energy of solvation -23.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds