Wall clock time and date at job start Mon Mar 30 2020 07:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86808 * 119.99909 * 2 1 4 4 H 1.48499 * 109.47098 * 85.18334 * 3 2 1 5 5 H 1.48496 * 109.47133 * 205.18763 * 3 2 1 6 6 H 1.48499 * 109.46703 * 325.18780 * 3 2 1 7 7 C 1.39936 * 120.00435 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00358 * 196.95727 * 7 2 1 9 9 C 1.41350 * 119.99742 * 16.95395 * 7 2 1 10 10 C 1.40748 * 120.23551 * 25.45870 * 9 7 2 11 11 C 1.37649 * 119.79525 * 179.69162 * 10 9 7 12 12 Br 1.89102 * 119.85410 * 180.31865 * 11 10 9 13 13 C 1.38760 * 120.28810 * 0.60414 * 11 10 9 14 14 C 1.38727 * 120.49081 * 359.67335 * 13 11 10 15 15 F 1.35099 * 119.90471 * 180.02562 * 14 13 11 16 16 C 1.38044 * 120.19086 * 0.02562 * 14 13 11 17 17 Cl 1.73594 * 120.14654 * 179.97438 * 16 14 13 18 18 H 0.96999 * 120.00158 * 0.02562 * 1 2 3 19 19 H 1.08000 * 120.10068 * 359.97438 * 10 9 7 20 20 H 1.08009 * 119.75800 * 179.68936 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.3881 2.1053 1.3951 5 1 3.5871 1.4131 -0.5958 6 1 1.4943 2.6212 -0.7993 7 6 2.0082 -1.2118 -0.0005 8 1 3.0529 -1.2323 0.2722 9 6 1.3475 -2.4092 -0.3580 10 6 0.2181 -2.3722 -1.1971 11 6 -0.4145 -3.5443 -1.5446 12 35 -1.9267 -3.4973 -2.6791 13 6 0.0490 -4.7596 -1.0614 14 6 1.1577 -4.8095 -0.2290 15 9 1.5992 -5.9993 0.2343 16 6 1.8111 -3.6468 0.1273 17 17 3.1979 -3.7105 1.1696 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1484 -1.4275 -1.5707 20 1 -0.4569 -5.6737 -1.3355 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217616874.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:37 Heat of formation + Delta-G solvation = -56.971933 kcal Electronic energy + Delta-G solvation = -11885.110231 eV Core-core repulsion = 9260.191779 eV Total energy + Delta-G solvation = -2624.918451 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.75558 -39.50894 -37.01212 -35.77836 -32.87133 -31.48217 -29.70680 -27.56870 -23.35134 -22.79113 -19.63508 -17.81139 -17.36384 -16.99249 -16.58976 -16.48112 -15.02269 -14.61192 -14.40324 -13.96099 -13.40618 -13.04790 -12.90715 -12.75551 -12.62823 -12.15645 -11.89986 -11.35659 -11.32274 -11.11404 -10.99064 -9.61437 -9.27093 -8.84341 -6.59476 0.35346 0.58657 0.76808 1.40916 1.45972 1.56553 1.63048 2.16313 2.41464 3.26303 3.54421 4.25820 4.57483 4.68047 5.00603 5.14012 5.19057 5.53687 5.62283 5.89926 6.27714 6.54345 6.63343 8.11254 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.010097 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.674382 B = 2772.320802 C = 4437.836496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.041 3.959 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.256 1.256 6 H -0.261 1.261 7 C -0.451 4.451 8 H 0.094 0.906 9 C 0.111 3.889 10 C -0.145 4.145 11 C -0.039 4.039 12 Br -0.053 7.053 13 C -0.253 4.253 14 C 0.135 3.865 15 F -0.145 7.145 16 C -0.193 4.193 17 Cl -0.082 7.082 18 H 0.300 0.700 19 H 0.133 0.867 20 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 -0.738 -3.574 4.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.185 1.185 7 C -0.478 4.478 8 H 0.112 0.888 9 C 0.106 3.894 10 C -0.166 4.166 11 C -0.119 4.119 12 Br 0.032 6.968 13 C -0.275 4.275 14 C 0.114 3.886 15 F -0.124 7.124 16 C -0.222 4.222 17 Cl -0.054 7.054 18 H 0.111 0.889 19 H 0.151 0.849 20 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.760 -0.623 -3.875 4.798 hybrid contribution 0.730 0.233 0.576 0.958 sum -2.030 -0.390 -3.299 3.893 Atomic orbital electron populations 1.69796 1.09011 1.31984 1.31069 1.26831 0.95524 1.04684 0.90809 0.85136 0.79396 0.75446 0.79681 1.18648 1.17952 1.18465 1.19968 0.98688 0.91032 1.38063 0.88801 1.17458 0.91251 0.91197 0.89481 1.21319 0.98343 0.96573 1.00381 1.21301 0.95360 0.95335 0.99919 1.96478 1.37443 1.99291 1.63616 1.20266 1.01146 0.97741 1.08366 1.17133 0.95128 0.78983 0.97364 1.91398 1.89040 1.44548 1.87407 1.20988 0.98612 0.94335 1.08308 1.98210 1.42159 1.98646 1.66378 0.88865 0.84940 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.52 10.97 21.83 0.24 -36.28 14 2 C 0.04 1.83 5.15 85.25 0.44 2.27 14 3 Si 0.98 33.83 29.59 68.60 2.03 35.86 14 4 H -0.26 -8.81 7.11 99.48 0.71 -8.10 14 5 H -0.26 -8.75 7.11 99.48 0.71 -8.05 14 6 H -0.26 -8.46 7.11 99.48 0.71 -7.75 14 7 C -0.45 -21.69 8.51 23.45 0.20 -21.49 14 8 H 0.09 4.42 7.13 -2.91 -0.02 4.40 14 9 C 0.11 5.49 5.57 -21.28 -0.12 5.37 14 10 C -0.14 -6.85 8.41 22.74 0.19 -6.66 14 11 C -0.04 -1.69 6.21 22.26 0.14 -1.55 14 12 Br -0.05 -1.87 33.69 -20.37 -0.69 -2.56 14 13 C -0.25 -10.70 9.76 22.51 0.22 -10.48 14 14 C 0.13 6.05 7.26 22.34 0.16 6.22 14 15 F -0.15 -6.18 16.82 44.97 0.76 -5.42 14 16 C -0.19 -9.18 6.38 22.85 0.15 -9.03 14 17 Cl -0.08 -3.55 27.25 -2.72 -0.07 -3.62 14 18 H 0.30 12.27 8.30 -92.71 -0.77 11.50 14 19 H 0.13 6.41 6.20 -2.91 -0.02 6.39 14 20 H 0.14 5.19 8.06 -2.91 -0.02 5.16 14 Total: -1.00 -48.76 226.59 4.93 -43.82 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 1.29 Total: 3.56 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 1.38 Total: -35.37 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.24 Total: -36.28 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.76 Total: -5.42 kcal Atomic # 14 Polarization: 33.83 SS G_CDS: 2.03 Total: 35.86 kcal Atomic # 17 Polarization: -3.55 SS G_CDS: -0.07 Total: -3.62 kcal Atomic # 35 Polarization: -1.87 SS G_CDS: -0.69 Total: -2.56 kcal Total: -48.76 4.93 -43.82 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217616874.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.150 kcal (2) G-P(sol) polarization free energy of solvation -48.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds