Wall clock time and date at job start Mon Mar 30 2020 07:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30858 * 1 3 3 Si 1.86807 * 119.99449 * 2 1 4 4 H 1.48499 * 109.46847 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46997 * 299.99577 * 3 2 1 6 6 H 1.48500 * 109.47079 * 59.99860 * 3 2 1 7 7 C 1.39919 * 120.00630 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00215 * 196.79969 * 7 2 1 9 9 C 1.41250 * 119.99913 * 17.07998 * 7 2 1 10 10 C 1.40738 * 120.24415 * 25.33483 * 9 7 2 11 11 C 1.36568 * 119.90490 * 179.97438 * 10 9 7 12 12 Br 1.89097 * 119.79607 * 180.02562 * 11 10 9 13 13 C 1.38974 * 120.41170 * 0.02562 * 11 10 9 14 14 Cl 1.73598 * 119.74688 * 179.97438 * 13 11 10 15 15 C 1.38631 * 120.50230 * 359.97438 * 13 11 10 16 16 C 1.37957 * 120.08146 * 359.73769 * 15 13 11 17 17 F 1.35104 * 120.20433 * 180.25144 * 16 15 13 18 18 H 0.96994 * 120.00337 * 0.02562 * 1 2 3 19 19 H 1.08004 * 120.04742 * 359.95709 * 10 9 7 20 20 H 1.07993 * 119.95868 * 179.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6179 0.0000 4 1 3.7025 1.3466 0.0006 5 1 1.8837 2.3965 -1.2125 6 1 1.8836 2.3966 1.2125 7 6 2.0083 -1.2117 0.0005 8 1 3.0538 -1.2314 0.2709 9 6 1.3489 -2.4082 -0.3582 10 6 0.2196 -2.3711 -1.1972 11 6 -0.4124 -3.5322 -1.5401 12 35 -1.9291 -3.4788 -2.6682 13 6 0.0523 -4.7528 -1.0651 14 17 -0.7646 -6.2181 -1.5114 15 6 1.1632 -4.8090 -0.2377 16 6 1.8208 -3.6493 0.1168 17 9 2.9067 -3.7017 0.9190 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1470 -1.4257 -1.5691 20 1 1.5165 -5.7623 0.1267 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217616977.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:54 Heat of formation + Delta-G solvation = -48.035712 kcal Electronic energy + Delta-G solvation = -11871.991324 eV Core-core repulsion = 9247.460376 eV Total energy + Delta-G solvation = -2624.530948 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.52721 -37.80268 -35.57715 -33.97883 -31.15533 -29.99407 -27.98394 -25.57227 -21.85438 -20.84672 -17.68683 -16.52289 -15.76738 -14.98508 -14.46769 -14.33273 -13.51740 -12.97198 -12.50247 -12.48685 -12.01345 -11.65718 -11.39804 -10.87398 -10.61366 -10.34521 -10.25186 -10.05208 -9.83917 -9.37483 -9.27751 -7.88236 -7.59594 -7.15766 -4.75639 2.10961 2.34111 2.46167 2.88632 2.91618 2.97573 3.18178 3.67815 4.10790 5.03155 5.66298 5.72913 6.41234 6.47483 6.75593 6.83192 6.87776 7.22403 7.52319 7.57132 8.07219 8.32920 8.37490 9.76193 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.023399 B = 0.008638 C = 0.006426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.358814 B = 3240.768953 C = 4356.045943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.432 4.432 8 H 0.093 0.907 9 C 0.089 3.911 10 C -0.113 4.113 11 C -0.050 4.050 12 Br -0.081 7.081 13 C -0.123 4.123 14 Cl -0.099 7.099 15 C -0.097 4.097 16 C -0.015 4.015 17 F -0.153 7.153 18 H 0.291 0.709 19 H 0.144 0.856 20 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 -2.064 -3.384 4.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.149 4.149 3 Si 0.742 3.258 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.459 4.459 8 H 0.111 0.889 9 C 0.084 3.916 10 C -0.134 4.134 11 C -0.130 4.130 12 Br 0.004 6.996 13 C -0.153 4.153 14 Cl -0.071 7.071 15 C -0.118 4.118 16 C -0.036 4.036 17 F -0.132 7.132 18 H 0.102 0.898 19 H 0.162 0.838 20 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.041 -2.004 -3.797 5.261 hybrid contribution 0.687 0.519 0.445 0.969 sum -2.355 -1.485 -3.352 4.357 Atomic orbital electron populations 1.69777 1.07788 1.30530 1.31351 1.26066 0.94924 1.02086 0.91843 0.86056 0.81030 0.79669 0.79045 1.17919 1.19164 1.19461 1.19691 0.98397 0.90500 1.37353 0.88942 1.17617 0.91973 0.91425 0.90546 1.20905 0.97521 0.95990 0.98997 1.21077 0.95650 0.94759 1.01537 1.96472 1.38904 1.99242 1.65015 1.19551 1.00463 0.84746 1.10517 1.98252 1.79350 1.37104 1.92399 1.20256 0.95262 0.97177 0.99108 1.17572 0.90855 0.94036 1.01132 1.91316 1.52694 1.97199 1.71952 0.89815 0.83814 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.04 10.97 55.55 0.61 -17.43 14 2 C 0.07 1.64 5.15 -17.34 -0.09 1.55 14 3 Si 0.92 17.00 29.59 -169.99 -5.03 11.97 14 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 14 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 14 6 H -0.27 -4.92 7.11 56.52 0.40 -4.52 14 7 C -0.43 -10.58 8.78 -37.81 -0.33 -10.92 14 8 H 0.09 2.22 7.74 -52.48 -0.41 1.81 14 9 C 0.09 2.22 5.57 -106.75 -0.59 1.63 14 10 C -0.11 -2.70 8.35 -39.24 -0.33 -3.03 14 11 C -0.05 -1.12 6.18 -39.91 -0.25 -1.37 14 12 Br -0.08 -1.57 32.47 -68.01 -2.21 -3.77 14 13 C -0.12 -2.67 6.34 -39.16 -0.25 -2.92 14 14 Cl -0.10 -1.88 27.70 -51.86 -1.44 -3.31 14 15 C -0.10 -2.12 9.79 -39.54 -0.39 -2.51 14 16 C -0.02 -0.36 7.31 -38.63 -0.28 -0.64 14 17 F -0.15 -3.57 16.73 2.25 0.04 -3.54 14 18 H 0.29 6.09 8.30 -40.82 -0.34 5.75 14 19 H 0.14 3.50 6.19 -52.48 -0.32 3.18 14 20 H 0.12 2.32 8.06 -52.49 -0.42 1.90 14 LS Contribution 226.53 15.07 3.41 3.41 Total: -1.00 -24.10 226.53 -7.41 -31.51 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -0.29 Total: -0.64 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -2.51 Total: -18.21 kcal Atomic # 7 Polarization: -18.04 SS G_CDS: 0.61 Total: -17.43 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.04 Total: -3.54 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -1.44 Total: -3.31 kcal Atomic # 35 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -24.10 -7.41 -31.51 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217616977.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.525 kcal (2) G-P(sol) polarization free energy of solvation -24.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds