Wall clock time and date at job start Mon Mar 30 2020 07:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86795 * 120.00036 * 2 1 4 4 H 1.48508 * 109.46983 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47362 * 120.00131 * 3 2 1 6 6 H 1.48505 * 109.47232 * 240.00319 * 3 2 1 7 7 C 1.39918 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00427 * 152.37256 * 7 2 1 9 9 C 1.41212 * 120.00265 * 332.36881 * 7 2 1 10 10 C 1.41039 * 120.25377 * 325.68817 * 9 7 2 11 11 F 1.35101 * 120.14833 * 359.97438 * 10 9 7 12 12 C 1.37838 * 119.70477 * 179.76543 * 10 9 7 13 13 C 1.38715 * 120.22817 * 0.51627 * 12 10 9 14 14 Cl 1.73599 * 119.73409 * 179.76419 * 13 12 10 15 15 C 1.38785 * 120.52665 * 359.73364 * 13 12 10 16 16 C 1.37654 * 120.29335 * 0.02562 * 15 13 12 17 17 Br 1.89096 * 120.12315 * 180.02562 * 16 15 13 18 18 H 0.97006 * 119.99712 * 176.71208 * 1 2 3 19 19 H 1.07998 * 119.88924 * 180.25454 * 12 10 9 20 20 H 1.07997 * 119.85079 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 1.2776 2.7464 0.0006 5 1 3.0965 1.6964 1.2124 6 1 3.0964 1.6964 -1.2126 7 6 2.0083 -1.2117 -0.0005 8 1 2.9959 -1.2650 -0.4343 9 6 1.4230 -2.3652 0.5661 10 6 0.5826 -2.2550 1.6933 11 9 0.3331 -1.0440 2.2379 12 6 0.0134 -3.3878 2.2343 13 6 0.2735 -4.6327 1.6805 14 17 -0.4453 -6.0517 2.3759 15 6 1.1032 -4.7528 0.5745 16 6 1.6791 -3.6353 0.0138 17 35 2.8082 -3.8044 -1.4935 18 1 -0.4850 -0.8387 -0.0482 19 1 -0.6339 -3.3064 3.0950 20 1 1.2979 -5.7274 0.1518 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217617097.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:32 Heat of formation + Delta-G solvation = -58.822317 kcal Electronic energy + Delta-G solvation = -12076.966493 eV Core-core repulsion = 9451.967803 eV Total energy + Delta-G solvation = -2624.998690 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.41497 -39.56056 -37.28430 -35.79898 -32.88020 -31.32348 -30.01658 -26.98552 -23.26463 -23.06494 -20.10064 -18.10625 -17.48345 -16.81067 -16.24829 -15.76592 -15.40662 -14.63418 -14.32714 -14.13907 -13.90953 -13.19558 -12.93338 -12.50328 -12.35416 -11.97898 -11.77879 -11.63429 -11.24295 -10.95206 -10.75883 -9.62898 -9.49632 -9.34018 -6.68031 0.30368 0.45444 0.93129 1.48566 1.52834 1.57957 1.78003 2.26507 2.42367 3.04234 3.73762 4.08176 4.22437 4.63519 4.85319 5.14203 5.19341 5.34106 5.52145 5.76657 5.92065 6.35945 6.59457 7.87035 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.010552 C = 0.006917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.061198 B = 2652.926027 C = 4046.774659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.008 3.992 3 Si 1.109 2.891 4 H -0.271 1.271 5 H -0.264 1.264 6 H -0.250 1.250 7 C -0.509 4.509 8 H 0.099 0.901 9 C 0.060 3.940 10 C -0.025 4.025 11 F -0.150 7.150 12 C -0.092 4.092 13 C -0.137 4.137 14 Cl -0.076 7.076 15 C -0.040 4.040 16 C -0.182 4.182 17 Br -0.054 7.054 18 H 0.280 0.720 19 H 0.135 0.865 20 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.347 -4.832 -1.021 5.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.213 4.213 3 Si 0.925 3.075 4 H -0.196 1.196 5 H -0.189 1.189 6 H -0.174 1.174 7 C -0.535 4.535 8 H 0.117 0.883 9 C 0.054 3.946 10 C -0.047 4.047 11 F -0.129 7.129 12 C -0.112 4.112 13 C -0.165 4.165 14 Cl -0.048 7.048 15 C -0.061 4.061 16 C -0.262 4.262 17 Br 0.031 6.969 18 H 0.092 0.908 19 H 0.153 0.847 20 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.422 -3.347 -1.494 5.015 hybrid contribution -0.476 -1.683 0.592 1.846 sum 2.947 -5.029 -0.903 5.898 Atomic orbital electron populations 1.70580 1.09046 1.33017 1.27176 1.28390 0.95408 1.07515 0.89945 0.83101 0.75056 0.69908 0.79431 1.19598 1.18878 1.17405 1.20872 1.04903 0.94129 1.33596 0.88325 1.17757 0.91898 0.93686 0.91249 1.17714 1.08984 0.80103 0.97856 1.91368 1.93342 1.43156 1.85063 1.20665 0.99777 0.90304 1.00456 1.19724 1.08304 0.86807 1.01713 1.98263 1.83059 1.39170 1.84286 1.20656 0.94213 0.97699 0.93529 1.21328 1.09869 0.94862 1.00177 1.96346 1.64513 1.97858 1.38178 0.90807 0.84736 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -40.33 12.05 21.82 0.26 -40.07 14 2 C 0.01 0.38 4.24 85.24 0.36 0.75 14 3 Si 1.11 41.40 30.01 68.60 2.06 43.46 14 4 H -0.27 -10.08 7.11 99.48 0.71 -9.38 14 5 H -0.26 -9.50 7.11 99.48 0.71 -8.79 14 6 H -0.25 -8.40 7.11 99.48 0.71 -7.69 14 7 C -0.51 -25.11 8.12 23.41 0.19 -24.92 14 8 H 0.10 4.72 7.26 -2.91 -0.02 4.70 14 9 C 0.06 2.92 5.06 -21.23 -0.11 2.81 14 10 C -0.03 -1.23 6.19 22.86 0.14 -1.09 14 11 F -0.15 -7.70 14.33 44.97 0.64 -7.06 14 12 C -0.09 -3.90 9.78 22.29 0.22 -3.68 14 13 C -0.14 -5.37 6.34 22.51 0.14 -5.23 14 14 Cl -0.08 -2.47 28.94 -2.72 -0.08 -2.55 14 15 C -0.04 -1.59 9.54 22.26 0.21 -1.38 14 16 C -0.18 -7.97 6.28 22.77 0.14 -7.83 14 17 Br -0.05 -2.04 32.24 -20.37 -0.66 -2.70 14 18 H 0.28 15.16 7.10 -92.70 -0.66 14.50 14 19 H 0.13 5.14 8.06 -2.91 -0.02 5.11 14 20 H 0.14 4.81 8.06 -2.91 -0.02 4.78 14 Total: -1.00 -51.18 224.93 4.93 -46.25 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: 1.39 Total: 3.23 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 1.30 Total: -40.56 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.26 Total: -40.07 kcal Atomic # 9 Polarization: -7.70 SS G_CDS: 0.64 Total: -7.06 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.06 Total: 43.46 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -0.08 Total: -2.55 kcal Atomic # 35 Polarization: -2.04 SS G_CDS: -0.66 Total: -2.70 kcal Total: -51.18 4.93 -46.25 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217617097.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.574 kcal (2) G-P(sol) polarization free energy of solvation -51.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds