Wall clock time and date at job start Mon Mar 30 2020 07:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86799 * 119.99929 * 2 1 4 4 H 1.48503 * 109.47012 * 239.99724 * 3 2 1 5 5 H 1.48498 * 109.47306 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46741 * 120.00362 * 3 2 1 7 7 C 1.39931 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99454 * 196.17028 * 7 2 1 9 9 C 1.41289 * 120.00325 * 16.44682 * 7 2 1 10 10 C 1.40735 * 120.23084 * 25.86099 * 9 7 2 11 11 C 1.37713 * 119.75168 * 179.97438 * 10 9 7 12 12 F 1.35096 * 119.89088 * 180.02562 * 11 10 9 13 13 C 1.39054 * 120.22184 * 359.97394 * 11 10 9 14 14 Br 1.89098 * 119.76360 * 180.02562 * 13 11 10 15 15 C 1.38623 * 120.47536 * 0.02562 * 13 11 10 16 16 C 1.37775 * 120.24387 * 359.73977 * 15 13 11 17 17 Cl 1.73597 * 120.11441 * 180.25841 * 16 15 13 18 18 H 0.97002 * 119.99973 * 4.98640 * 1 2 3 19 19 H 1.08004 * 120.12493 * 359.94900 * 10 9 7 20 20 H 1.08001 * 119.87714 * 180.02562 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6964 -1.2125 5 1 1.2775 2.7465 -0.0006 6 1 3.0962 1.6963 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0560 -1.2305 0.2599 9 6 1.3449 -2.4103 -0.3475 10 6 0.2142 -2.3776 -1.1848 11 6 -0.4242 -3.5517 -1.5171 12 9 -1.5095 -3.5237 -2.3211 13 6 0.0452 -4.7662 -1.0288 14 35 -0.8410 -6.3706 -1.4939 15 6 1.1581 -4.8091 -0.2034 16 6 1.8145 -3.6468 0.1375 17 17 3.2119 -3.7051 1.1659 18 1 -0.4850 0.8369 -0.0730 19 1 -0.1517 -1.4353 -1.5650 20 1 1.5146 -5.7577 0.1701 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217847165.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:25 Heat of formation + Delta-G solvation = -57.722309 kcal Electronic energy + Delta-G solvation = -11869.570360 eV Core-core repulsion = 9244.619370 eV Total energy + Delta-G solvation = -2624.950990 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.71957 -39.49515 -36.88962 -35.87505 -32.78894 -30.92129 -30.58622 -27.05827 -23.57421 -22.71061 -19.72098 -17.97809 -17.14968 -16.92657 -16.60148 -16.42849 -14.99130 -14.59699 -14.29785 -14.02757 -13.48804 -13.27695 -12.86399 -12.46654 -12.34675 -12.30625 -12.00743 -11.43139 -11.27860 -11.07563 -10.94967 -9.61487 -9.30377 -8.85413 -6.62741 0.40591 0.60532 0.88719 1.39849 1.47184 1.53116 1.74830 2.14667 2.39455 3.28023 3.52548 4.14709 4.65073 4.70289 5.01412 5.10384 5.24156 5.35905 5.60458 5.91930 6.28862 6.52424 6.59303 8.07253 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.007213 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.751058 B = 3880.820715 C = 4784.998561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.038 3.962 3 Si 0.985 3.015 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.255 1.255 7 C -0.444 4.444 8 H 0.100 0.900 9 C 0.118 3.882 10 C -0.209 4.209 11 C 0.132 3.868 12 F -0.149 7.149 13 C -0.253 4.253 14 Br -0.057 7.057 15 C -0.018 4.018 16 C -0.156 4.156 17 Cl -0.083 7.083 18 H 0.300 0.700 19 H 0.128 0.872 20 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.959 -4.202 -1.006 4.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.179 1.179 5 H -0.190 1.190 6 H -0.179 1.179 7 C -0.471 4.471 8 H 0.118 0.882 9 C 0.114 3.886 10 C -0.230 4.230 11 C 0.111 3.889 12 F -0.128 7.128 13 C -0.334 4.334 14 Br 0.027 6.973 15 C -0.038 4.038 16 C -0.184 4.184 17 Cl -0.055 7.055 18 H 0.111 0.889 19 H 0.146 0.854 20 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.486 -4.642 -1.031 4.780 hybrid contribution 0.133 0.957 0.027 0.967 sum 0.619 -3.685 -1.004 3.869 Atomic orbital electron populations 1.69815 1.09241 1.32380 1.30548 1.26932 0.95487 1.05044 0.90722 0.85170 0.78895 0.74871 0.80617 1.17948 1.18999 1.17898 1.20079 0.98554 0.91181 1.37264 0.88223 1.17495 0.90381 0.92316 0.88418 1.21092 1.01386 0.95765 1.04781 1.17437 0.85133 0.93909 0.92402 1.91390 1.52610 1.97411 1.71369 1.20891 1.05994 0.89609 1.16869 1.96396 1.78394 1.29415 1.93117 1.20373 0.91996 0.97331 0.94138 1.20801 0.96793 0.94588 1.06267 1.98218 1.41376 1.98649 1.67216 0.88874 0.85382 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.26 10.96 21.82 0.24 -37.02 14 2 C 0.04 1.68 5.16 85.25 0.44 2.12 14 3 Si 0.99 33.59 29.59 68.60 2.03 35.62 14 4 H -0.26 -8.53 7.11 99.48 0.71 -7.82 14 5 H -0.27 -8.62 7.11 99.48 0.71 -7.92 14 6 H -0.26 -8.48 7.11 99.48 0.71 -7.78 14 7 C -0.44 -21.04 8.51 23.43 0.20 -20.84 14 8 H 0.10 4.52 7.13 -2.91 -0.02 4.50 14 9 C 0.12 5.77 5.56 -21.27 -0.12 5.65 14 10 C -0.21 -10.31 8.65 22.76 0.20 -10.11 14 11 C 0.13 6.17 7.25 22.34 0.16 6.33 14 12 F -0.15 -6.73 16.71 44.97 0.75 -5.98 14 13 C -0.25 -10.81 6.25 22.56 0.14 -10.67 14 14 Br -0.06 -2.03 33.26 -20.37 -0.68 -2.71 14 15 C -0.02 -0.74 9.54 22.25 0.21 -0.53 14 16 C -0.16 -6.95 6.37 22.81 0.15 -6.80 14 17 Cl -0.08 -3.25 27.60 -2.72 -0.08 -3.32 14 18 H 0.30 12.59 8.30 -92.71 -0.77 11.82 14 19 H 0.13 6.53 6.21 -2.91 -0.02 6.51 14 20 H 0.14 5.07 8.06 -2.91 -0.02 5.05 14 Total: -1.00 -48.84 226.43 4.94 -43.91 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.29 Total: 4.36 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: 1.38 Total: -34.85 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.24 Total: -37.02 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.75 Total: -5.98 kcal Atomic # 14 Polarization: 33.59 SS G_CDS: 2.03 Total: 35.62 kcal Atomic # 17 Polarization: -3.25 SS G_CDS: -0.08 Total: -3.32 kcal Atomic # 35 Polarization: -2.03 SS G_CDS: -0.68 Total: -2.71 kcal Total: -48.84 4.94 -43.91 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217847165.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.816 kcal (2) G-P(sol) polarization free energy of solvation -48.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds