Wall clock time and date at job start Mon Mar 30 2020 07:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47380 * 2 1 4 4 C 1.53003 * 109.47243 * 119.99246 * 2 1 3 5 5 C 1.50700 * 109.47468 * 184.99917 * 4 2 1 6 6 H 1.08001 * 119.99441 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00214 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00022 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00062 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47101 * 90.00143 * 9 7 5 11 11 H 1.48496 * 109.47088 * 210.00224 * 9 7 5 12 12 H 1.48501 * 109.46963 * 329.99796 * 9 7 5 13 13 N 1.46494 * 109.47305 * 239.99352 * 2 1 3 14 14 C 1.34784 * 119.99635 * 85.00093 * 13 2 1 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 2 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 2 17 17 C 1.53003 * 109.46986 * 300.00090 * 16 14 13 18 18 C 1.53005 * 109.47219 * 180.02562 * 17 16 14 19 19 C 1.52994 * 109.46906 * 59.99762 * 18 17 16 20 20 C 1.52998 * 109.47366 * 299.99803 * 19 18 17 21 21 C 1.52992 * 109.47257 * 180.02562 * 16 14 13 22 22 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46997 * 300.00209 * 1 2 3 24 24 H 1.08991 * 109.46933 * 60.00690 * 1 2 3 25 25 H 1.08999 * 109.47427 * 305.00598 * 4 2 1 26 26 H 1.09010 * 109.47093 * 65.00446 * 4 2 1 27 27 H 0.96991 * 120.00183 * 180.02562 * 8 7 5 28 28 H 0.96995 * 120.00292 * 265.27526 * 13 2 1 29 29 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 30 30 H 1.09005 * 109.46932 * 299.99942 * 17 16 14 31 31 H 1.08998 * 109.47453 * 59.99968 * 17 16 14 32 32 H 1.09000 * 109.46608 * 299.99989 * 18 17 16 33 33 H 1.08999 * 109.46783 * 179.97438 * 18 17 16 34 34 H 1.09005 * 109.46734 * 180.02562 * 19 18 17 35 35 H 1.08992 * 109.47456 * 60.00368 * 19 18 17 36 36 H 1.09000 * 109.47603 * 300.00663 * 20 19 18 37 37 H 1.08998 * 109.47444 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47330 * 299.99977 * 21 16 14 39 39 H 1.09005 * 109.47124 * 59.99773 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7211 1.2494 5 6 3.5420 -0.6148 1.3129 6 1 4.0789 -0.0854 0.5396 7 6 4.2305 -1.1933 2.3580 8 7 3.5766 -1.8383 3.2993 9 14 6.0921 -1.0609 2.4370 10 1 6.4698 0.1613 3.1912 11 1 6.6446 -2.2564 3.1230 12 1 6.6416 -0.9824 1.0597 13 7 2.0184 -0.6907 -1.1960 14 6 2.1471 -0.0184 -2.3571 15 8 1.8582 1.1582 -2.4117 16 6 2.6489 -0.7290 -3.5876 17 6 4.0514 -1.2800 -3.3221 18 6 4.5612 -2.0009 -4.5716 19 6 4.6129 -1.0174 -5.7424 20 6 3.2105 -0.4665 -6.0080 21 6 2.7011 0.2542 -4.7587 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.6054 -0.2616 2.1370 26 1 1.7517 -1.7715 1.2058 27 1 4.0609 -2.2449 4.0347 28 1 2.2453 -1.6328 -1.1534 29 1 1.9761 -1.5508 -3.8324 30 1 4.7243 -0.4581 -3.0773 31 1 4.0147 -1.9803 -2.4877 32 1 3.8883 -2.8227 -4.8168 33 1 5.5605 -2.3930 -4.3825 34 1 4.9756 -1.5311 -6.6327 35 1 5.2856 -0.1957 -5.4972 36 1 2.5376 -1.2882 -6.2532 37 1 3.2472 0.2339 -6.8424 38 1 1.7022 0.6472 -4.9481 39 1 3.3743 1.0758 -4.5136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230513289.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:26 Heat of formation + Delta-G solvation = -102.679642 kcal Electronic energy + Delta-G solvation = -17705.959601 eV Core-core repulsion = 15031.711730 eV Total energy + Delta-G solvation = -2674.247871 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.13809 -38.66253 -37.03982 -34.71618 -32.90219 -31.61798 -31.09906 -29.29103 -25.44873 -24.56960 -23.42060 -21.87719 -21.21452 -20.51853 -18.52097 -18.02098 -17.12330 -16.51590 -16.30396 -15.51347 -15.10341 -14.98699 -14.83740 -14.64577 -13.94279 -13.73127 -13.56723 -13.41071 -13.24684 -13.10717 -12.91706 -12.65385 -12.47543 -12.24961 -12.13356 -12.01421 -11.49806 -11.36884 -11.31601 -11.25142 -10.96684 -10.63041 -10.47180 -9.83919 -8.20430 -6.29301 1.38031 1.39738 1.49691 1.77027 2.39581 2.44504 3.13996 3.70729 3.79330 3.83606 4.18200 4.30278 4.33134 4.37137 4.47258 4.48475 4.54982 4.60721 4.62860 4.74757 4.95126 4.99764 5.01987 5.16943 5.20656 5.21038 5.27880 5.28866 5.33475 5.39143 5.43280 5.49492 5.58517 5.79368 5.85419 6.22445 6.77976 6.83574 7.38866 7.42436 8.90582 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.021585 B = 0.007141 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.910751 B = 3920.173545 C = 4886.492659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.150 3.850 3 H 0.046 0.954 4 C 0.025 3.975 5 C -0.527 4.527 6 H 0.049 0.951 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.953 3.047 10 H -0.280 1.280 11 H -0.279 1.279 12 H -0.267 1.267 13 N -0.699 5.699 14 C 0.506 3.494 15 O -0.596 6.596 16 C -0.096 4.096 17 C -0.112 4.112 18 C -0.112 4.112 19 C -0.121 4.121 20 C -0.111 4.111 21 C -0.096 4.096 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.008 0.992 26 H 0.013 0.987 27 H 0.264 0.736 28 H 0.406 0.594 29 H 0.118 0.882 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.277 -2.683 -17.034 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.045 3.955 3 H 0.065 0.935 4 C -0.013 4.013 5 C -0.565 4.565 6 H 0.067 0.933 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.779 3.221 10 H -0.206 1.206 11 H -0.205 1.205 12 H -0.191 1.191 13 N -0.348 5.348 14 C 0.294 3.706 15 O -0.478 6.478 16 C -0.117 4.117 17 C -0.150 4.150 18 C -0.149 4.149 19 C -0.158 4.158 20 C -0.149 4.149 21 C -0.134 4.134 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.026 0.974 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.242 0.758 29 H 0.136 0.864 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.458 -1.958 -16.886 17.005 hybrid contribution 0.957 -0.081 0.899 1.315 sum 0.500 -2.039 -15.987 16.125 Atomic orbital electron populations 1.22052 0.94855 1.02167 1.01521 1.20888 0.93470 0.95804 0.85353 0.93530 1.19245 0.95138 0.95185 0.91686 1.21417 0.93132 1.33924 1.08077 0.93302 1.25765 1.02829 0.94954 0.95328 1.70053 1.37317 1.36685 1.12626 0.85628 0.80480 0.77601 0.78434 1.20551 1.20457 1.19126 1.46016 1.65510 1.14281 1.08997 1.21369 0.76621 0.86987 0.85650 1.90606 1.53080 1.18044 1.86055 1.21357 0.98932 0.99594 0.91795 1.21535 0.93891 0.99919 0.99615 1.21519 1.01782 0.98226 0.93411 1.21578 0.96899 0.98781 0.98577 1.21523 0.96928 1.00315 0.96122 1.21296 1.01290 0.96893 0.93916 0.91723 0.91627 0.93248 0.97361 0.96861 0.92741 0.75806 0.86419 0.93626 0.91442 0.90166 0.91198 0.90084 0.92993 0.90455 0.90875 0.92275 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.29 9.48 71.98 0.68 -4.61 16 2 C 0.15 6.38 2.52 44.99 0.11 6.50 16 3 H 0.05 2.25 7.58 -2.39 -0.02 2.23 16 4 C 0.02 1.24 4.52 29.85 0.13 1.38 16 5 C -0.53 -28.92 8.84 25.60 0.23 -28.70 16 6 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 7 C 0.01 0.54 5.46 84.65 0.46 1.00 16 8 N -0.93 -54.11 13.29 21.45 0.28 -53.83 16 9 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 N -0.70 -26.09 4.68 -442.53 -2.07 -28.16 16 14 C 0.51 18.35 7.12 87.66 0.62 18.97 16 15 O -0.60 -26.17 15.64 -3.03 -0.05 -26.22 16 16 C -0.10 -2.52 2.53 -11.54 -0.03 -2.55 16 17 C -0.11 -2.82 5.10 30.60 0.16 -2.66 16 18 C -0.11 -2.06 5.92 30.59 0.18 -1.88 16 19 C -0.12 -2.05 5.92 30.59 0.18 -1.87 16 20 C -0.11 -1.95 5.92 30.58 0.18 -1.77 16 21 C -0.10 -2.39 4.49 30.58 0.14 -2.25 16 22 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.26 14.56 8.31 -92.72 -0.77 13.79 16 28 H 0.41 13.85 8.03 -92.71 -0.74 13.11 16 29 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.07 1.77 7.57 -2.39 -0.02 1.75 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.54 8.10 -2.38 -0.02 1.53 16 39 H 0.05 1.33 8.10 -2.38 -0.02 1.31 16 Total: -1.00 -65.27 313.56 3.50 -61.77 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.26 Total: 19.17 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 3.05 Total: -18.44 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -1.79 Total: -81.99 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.05 Total: -26.22 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -65.27 3.50 -61.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230513289.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.913 kcal (2) G-P(sol) polarization free energy of solvation -65.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds