Wall clock time and date at job start Mon Mar 30 2020 07:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46496 * 109.47064 * 119.99965 * 2 1 3 14 14 C 1.34779 * 119.99733 * 275.00123 * 13 2 1 15 15 O 1.21281 * 120.00342 * 359.97438 * 14 13 2 16 16 C 1.50708 * 119.99810 * 180.02562 * 14 13 2 17 17 C 1.52995 * 109.46953 * 299.99642 * 16 14 13 18 18 C 1.53005 * 109.47150 * 180.02562 * 17 16 14 19 19 C 1.52992 * 109.46936 * 59.99887 * 18 17 16 20 20 C 1.52990 * 109.47541 * 300.00255 * 19 18 17 21 21 C 1.52997 * 109.46849 * 180.02562 * 16 14 13 22 22 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 23 23 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 24 24 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 26 26 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 27 27 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 28 28 H 0.97000 * 120.00665 * 94.99819 * 13 2 1 29 29 H 1.08999 * 109.46778 * 59.99937 * 16 14 13 30 30 H 1.09001 * 109.47882 * 300.00254 * 17 16 14 31 31 H 1.09008 * 109.47170 * 60.00239 * 17 16 14 32 32 H 1.09002 * 109.46981 * 299.99994 * 18 17 16 33 33 H 1.08999 * 109.47105 * 180.02562 * 18 17 16 34 34 H 1.09007 * 109.46941 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.47198 * 60.00240 * 19 18 17 36 36 H 1.09001 * 109.47570 * 299.99963 * 20 19 18 37 37 H 1.09003 * 109.47770 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.47208 * 299.99622 * 21 16 14 39 39 H 1.09002 * 109.47511 * 59.99830 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 7 2.0183 -0.6906 1.1961 14 6 2.1470 -0.0182 2.3571 15 8 1.8590 1.1587 2.4115 16 6 2.6499 -0.7284 3.5875 17 6 1.7063 -1.8826 3.9315 18 6 2.2165 -2.6034 5.1810 19 6 2.2674 -1.6199 6.3519 20 6 3.2108 -0.4657 6.0080 21 6 2.7005 0.2545 4.7588 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.6055 -0.2619 -2.1370 26 1 1.7517 -1.7715 -1.2055 27 1 6.0246 -1.4984 -3.1541 28 1 2.2490 -1.6317 1.1527 29 1 3.6492 -1.1202 3.3979 30 1 0.7069 -1.4909 4.1211 31 1 1.6697 -2.5831 3.0971 32 1 3.2159 -2.9952 4.9919 33 1 1.5445 -3.4259 5.4258 34 1 2.6313 -2.1333 7.2420 35 1 1.2679 -1.2282 6.5411 36 1 4.2103 -0.8574 5.8188 37 1 3.2475 0.2347 6.8423 38 1 3.3725 1.0771 4.5141 39 1 1.7010 0.6460 4.9483 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230513328.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:28 Heat of formation + Delta-G solvation = -80.871210 kcal Electronic energy + Delta-G solvation = -17628.177847 eV Core-core repulsion = 14954.875661 eV Total energy + Delta-G solvation = -2673.302186 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.79830 -37.54837 -35.44253 -32.64446 -31.61961 -30.69693 -29.93657 -27.91577 -23.90149 -22.80571 -22.45580 -20.41895 -19.82938 -19.38311 -16.77789 -16.71176 -15.72642 -14.96145 -14.61915 -14.29664 -14.14007 -14.01434 -13.26463 -12.92535 -12.81809 -12.36022 -12.31505 -12.19772 -12.00088 -11.77181 -11.60822 -11.20243 -11.12398 -10.85899 -10.62843 -10.46738 -10.38002 -10.09011 -9.89448 -9.72089 -9.30329 -9.07782 -8.59664 -8.29480 -6.08569 -4.07519 3.21867 3.25400 3.34505 3.36742 3.83454 4.39734 4.69645 4.74138 4.78329 5.21945 5.23118 5.25044 5.37868 5.43947 5.49252 5.54423 5.62682 5.72786 5.85422 5.93941 5.98425 6.01351 6.07159 6.09656 6.15901 6.24203 6.37335 6.44829 6.47721 6.51283 6.67064 6.93321 7.13298 7.41631 7.70510 8.22251 8.48873 8.87105 8.98099 9.52785 11.04601 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.029718 B = 0.005793 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.949353 B = 4832.177344 C = 5091.107813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.151 3.849 3 H 0.080 0.920 4 C -0.022 4.022 5 C -0.519 4.519 6 H 0.074 0.926 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.266 1.266 12 H -0.288 1.288 13 N -0.701 5.701 14 C 0.514 3.486 15 O -0.557 6.557 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.097 4.097 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.016 0.984 27 H 0.263 0.737 28 H 0.399 0.601 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.793 -3.702 13.926 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 H 0.099 0.901 4 C -0.059 4.059 5 C -0.557 4.557 6 H 0.092 0.908 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.190 1.190 12 H -0.214 1.214 13 N -0.350 5.350 14 C 0.300 3.700 15 O -0.436 6.436 16 C -0.129 4.129 17 C -0.147 4.147 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.135 4.135 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.233 0.767 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.845 -2.905 13.820 16.154 hybrid contribution -0.125 -1.022 -0.943 1.396 sum -7.970 -3.926 12.877 15.644 Atomic orbital electron populations 1.22205 0.97225 1.01093 1.01367 1.20962 0.91426 0.97917 0.84991 0.90147 1.19906 0.97879 0.95382 0.92772 1.21077 0.89464 1.35218 1.09894 0.90827 1.25030 0.94706 0.95912 0.97743 1.69916 1.06601 1.45279 1.32130 0.86808 0.80479 0.80395 0.81746 1.20359 1.19026 1.21387 1.46005 1.65667 1.14042 1.09318 1.20514 0.77600 0.87199 0.84698 1.90631 1.51300 1.16176 1.85464 1.21342 1.01047 0.96847 0.93686 1.21510 0.98724 0.96300 0.98168 1.21530 1.01551 0.97713 0.94749 1.21552 0.99953 0.96568 0.97697 1.21561 0.99179 0.97347 0.97684 1.21295 1.02364 0.97122 0.92702 0.93190 0.92189 0.93211 0.95092 0.96607 0.92720 0.76697 0.88585 0.91648 0.91354 0.91677 0.91927 0.92258 0.92081 0.91916 0.91977 0.91301 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.48 37.16 0.35 -2.37 16 2 C 0.15 3.06 2.52 -67.93 -0.17 2.89 16 3 H 0.08 1.84 7.58 -51.93 -0.39 1.45 16 4 C -0.02 -0.50 3.58 -27.88 -0.10 -0.60 16 5 C -0.52 -14.25 9.39 -34.44 -0.32 -14.58 16 6 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 7 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 9 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.70 -12.90 4.68 -53.81 -0.25 -13.15 16 14 C 0.51 9.33 7.12 -10.98 -0.08 9.26 16 15 O -0.56 -11.99 15.64 5.56 0.09 -11.90 16 16 C -0.11 -1.51 2.53 -91.77 -0.23 -1.74 16 17 C -0.11 -1.25 5.10 -26.73 -0.14 -1.38 16 18 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 19 C -0.12 -1.11 5.92 -26.74 -0.16 -1.27 16 20 C -0.12 -1.24 5.92 -26.76 -0.16 -1.40 16 21 C -0.10 -1.27 4.49 -26.76 -0.12 -1.39 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 26 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.40 6.74 8.02 -40.82 -0.33 6.41 16 29 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.75 7.56 -51.92 -0.39 0.36 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 39 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -31.24 309.94 -7.73 -38.97 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.96 Total: 3.61 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -1.38 Total: -12.06 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.52 Total: -39.66 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.24 -7.73 -38.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230513328.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.898 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds