Wall clock time and date at job start Mon Mar 30 2020 07:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30703 * 1 3 3 Si 1.86798 * 120.00223 * 2 1 4 4 H 1.48500 * 109.47293 * 269.99545 * 3 2 1 5 5 H 1.48497 * 109.47203 * 29.99915 * 3 2 1 6 6 H 1.48508 * 109.47299 * 149.99699 * 3 2 1 7 7 C 1.40124 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00281 * 162.46373 * 7 2 1 9 9 C 1.41219 * 119.99599 * 342.47332 * 7 2 1 10 10 C 1.41522 * 119.82668 * 154.44183 * 9 7 2 11 11 C 1.35466 * 120.72923 * 179.97438 * 10 9 7 12 12 C 1.40758 * 120.04078 * 0.02562 * 11 10 9 13 13 C 1.40485 * 121.74107 * 179.72555 * 12 11 10 14 14 N 1.31865 * 118.46947 * 179.75555 * 13 12 11 15 15 C 1.32587 * 121.65946 * 0.56329 * 14 13 12 16 16 Br 1.89103 * 118.61634 * 179.70323 * 15 14 13 17 17 N 1.31238 * 122.76480 * 359.67472 * 15 14 13 18 18 C 1.34091 * 120.23756 * 0.02770 * 17 15 14 19 19 C 1.39790 * 121.77699 * 179.97438 * 18 17 15 20 20 H 0.97004 * 120.00105 * 0.02562 * 1 2 3 21 21 H 1.07995 * 119.63302 * 359.97438 * 10 9 7 22 22 H 1.07999 * 119.98034 * 180.02562 * 11 10 9 23 23 H 1.07993 * 120.77015 * 0.02562 * 13 12 11 24 24 H 1.07999 * 120.36456 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.4887 2.0463 -1.4001 5 1 1.4386 2.6526 0.7000 6 1 3.5387 1.4401 0.7001 7 6 2.0077 -1.2135 0.0005 8 1 3.0500 -1.2354 -0.2812 9 6 1.3507 -2.4079 0.3694 10 6 1.8221 -3.6500 -0.1183 11 6 1.2061 -4.8069 0.2242 12 6 0.0840 -4.7831 1.0736 13 6 -0.5854 -5.9604 1.4471 14 7 -1.6269 -5.8637 2.2500 15 6 -2.0550 -4.6908 2.6963 16 35 -3.5625 -4.6513 3.8373 17 7 -1.4761 -3.5563 2.3799 18 6 -0.4050 -3.5465 1.5733 19 6 0.2360 -2.3570 1.2151 20 1 -0.4850 0.8401 -0.0004 21 1 2.6823 -3.6758 -0.7708 22 1 1.5763 -5.7481 -0.1547 23 1 -0.2520 -6.9230 1.0885 24 1 -0.1247 -1.4092 1.5865 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237980445.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:13 Heat of formation + Delta-G solvation = 33.799054 kcal Electronic energy + Delta-G solvation = -13241.625408 eV Core-core repulsion = 10778.828988 eV Total energy + Delta-G solvation = -2462.796420 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 277.975 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.70804 -38.43291 -35.69273 -34.77029 -32.93947 -31.72785 -30.25430 -28.18803 -25.09959 -24.06863 -22.87901 -20.01670 -18.70974 -18.17190 -17.37556 -16.78075 -15.94126 -15.30209 -15.19783 -14.66039 -14.28946 -13.78278 -13.49810 -12.96056 -12.85754 -12.53091 -12.44515 -12.05037 -11.89290 -11.56343 -11.52447 -11.36910 -11.11835 -10.02589 -9.75446 -9.05960 -8.85804 -6.57964 -0.39966 0.08673 0.11884 1.28609 1.38742 1.47740 1.54842 2.08011 2.16264 2.84414 3.40593 3.60320 3.91450 4.02227 4.13699 4.46459 4.70810 4.88512 5.00935 5.21103 5.42050 5.54037 5.71899 5.84234 5.93943 6.20290 6.49251 6.62777 6.73401 7.20960 8.08302 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.028267 B = 0.005601 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.330828 B = 4997.699268 C = 5907.562854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.028 3.972 3 Si 0.990 3.010 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.250 1.250 7 C -0.447 4.447 8 H 0.106 0.894 9 C 0.096 3.904 10 C -0.162 4.162 11 C -0.063 4.063 12 C -0.251 4.251 13 C 0.209 3.791 14 N -0.571 5.571 15 C 0.300 3.700 16 Br 0.037 6.963 17 N -0.540 5.540 18 C 0.155 3.845 19 C -0.232 4.232 20 H 0.295 0.705 21 H 0.139 0.861 22 H 0.165 0.835 23 H 0.214 0.786 24 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.040 -5.961 1.590 6.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.192 4.192 3 Si 0.809 3.191 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.173 1.173 7 C -0.475 4.475 8 H 0.124 0.876 9 C 0.090 3.910 10 C -0.181 4.181 11 C -0.083 4.083 12 C -0.257 4.257 13 C 0.036 3.964 14 N -0.291 5.291 15 C -0.049 4.049 16 Br 0.119 6.881 17 N -0.259 5.259 18 C 0.034 3.966 19 C -0.255 4.255 20 H 0.107 0.893 21 H 0.156 0.844 22 H 0.182 0.818 23 H 0.231 0.769 24 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.622 -5.652 2.619 6.437 hybrid contribution 0.804 1.024 -0.631 1.447 sum -0.817 -4.627 1.988 5.102 Atomic orbital electron populations 1.69859 1.09794 1.31746 1.30093 1.27115 0.95422 1.05633 0.91041 0.85065 0.79161 0.74812 0.80042 1.17774 1.19790 1.17274 1.20302 0.99045 0.91581 1.36578 0.87578 1.18055 0.90827 0.94112 0.88012 1.21481 1.02410 0.92073 1.02132 1.20913 0.92887 0.99481 0.95015 1.19522 1.03249 0.94768 1.08200 1.24025 0.86643 0.98638 0.87046 1.68096 1.17808 1.26204 1.16968 1.24324 0.96145 0.87139 0.97317 1.96588 1.32419 1.98919 1.60201 1.68562 1.11055 1.29359 1.16922 1.19049 0.90544 0.94727 0.92322 1.20716 1.03315 0.94618 1.06877 0.89341 0.84367 0.81777 0.76919 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.69 10.98 21.85 0.24 -39.45 14 2 C 0.03 1.28 5.12 85.32 0.44 1.72 14 3 Si 0.99 34.15 29.59 68.60 2.03 36.18 14 4 H -0.25 -8.22 7.11 99.48 0.71 -7.52 14 5 H -0.27 -9.40 7.11 99.48 0.71 -8.69 14 6 H -0.25 -8.26 7.11 99.48 0.71 -7.55 14 7 C -0.45 -21.04 9.03 23.46 0.21 -20.82 14 8 H 0.11 4.46 7.91 -2.91 -0.02 4.43 14 9 C 0.10 4.68 5.57 -21.31 -0.12 4.56 14 10 C -0.16 -6.49 9.67 22.44 0.22 -6.27 14 11 C -0.06 -2.24 9.75 22.25 0.22 -2.02 14 12 C -0.25 -10.53 5.76 -21.17 -0.12 -10.65 14 13 C 0.21 7.48 11.14 85.24 0.95 8.43 14 14 N -0.57 -23.13 10.33 -193.64 -2.00 -25.13 14 15 C 0.30 13.31 8.04 180.81 1.45 14.76 14 16 Br 0.04 1.33 34.02 -20.37 -0.69 0.64 14 17 N -0.54 -27.35 10.38 -188.66 -1.96 -29.31 14 18 C 0.16 7.91 6.60 40.12 0.26 8.17 14 19 C -0.23 -12.47 8.68 23.08 0.20 -12.27 14 20 H 0.30 13.45 8.29 -92.71 -0.77 12.68 14 21 H 0.14 4.61 8.06 -2.91 -0.02 4.59 14 22 H 0.16 4.03 8.06 -2.91 -0.02 4.01 14 23 H 0.21 5.07 8.06 -2.91 -0.02 5.04 14 24 H 0.10 5.87 6.18 -2.91 -0.02 5.85 14 Total: -1.00 -61.19 242.53 2.57 -58.62 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.24 Total: 12.85 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 3.71 Total: -14.39 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -3.72 Total: -93.89 kcal Atomic # 14 Polarization: 34.15 SS G_CDS: 2.03 Total: 36.18 kcal Atomic # 35 Polarization: 1.33 SS G_CDS: -0.69 Total: 0.64 kcal Total: -61.19 2.57 -58.62 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237980445.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.416 kcal (2) G-P(sol) polarization free energy of solvation -61.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds