Wall clock time and date at job start Mon Mar 30 2020 07:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86795 * 120.00232 * 2 1 4 4 H 1.48500 * 109.47184 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47302 * 120.00137 * 3 2 1 6 6 H 1.48506 * 109.47360 * 239.99869 * 3 2 1 7 7 C 1.39923 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00530 * 152.25366 * 7 2 1 9 9 C 1.41212 * 120.00144 * 332.25632 * 7 2 1 10 10 C 1.41030 * 120.25735 * 325.87417 * 9 7 2 11 11 F 1.35096 * 120.15250 * 359.97176 * 10 9 7 12 12 C 1.37851 * 119.70056 * 179.70080 * 10 9 7 13 13 C 1.38683 * 120.24284 * 0.57367 * 12 10 9 14 14 Br 1.89101 * 119.73280 * 179.74292 * 13 12 10 15 15 C 1.38743 * 120.53589 * 359.72091 * 13 12 10 16 16 C 1.37699 * 120.29310 * 359.97438 * 15 13 12 17 17 Cl 1.73595 * 120.12928 * 180.02562 * 16 15 13 18 18 H 0.97007 * 120.00206 * 176.57864 * 1 2 3 19 19 H 1.07996 * 119.88250 * 180.31727 * 12 10 9 20 20 H 1.07996 * 119.85202 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 1.2777 2.7464 -0.0006 5 1 3.0964 1.6963 1.2125 6 1 3.0965 1.6963 -1.2125 7 6 2.0082 -1.2118 -0.0005 8 1 2.9951 -1.2655 -0.4360 9 6 1.4239 -2.3647 0.5682 10 6 0.5823 -2.2530 1.6943 11 9 0.3307 -1.0412 2.2360 12 6 0.0130 -3.3853 2.2365 13 6 0.2749 -4.6310 1.6860 14 35 -0.5079 -6.1756 2.4458 15 6 1.1063 -4.7530 0.5820 16 6 1.6816 -3.6359 0.0188 17 17 2.7207 -3.7935 -1.3629 18 1 -0.4851 -0.8386 -0.0501 19 1 -0.6360 -3.3027 3.0957 20 1 1.3024 -5.7284 0.1619 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238569383.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:35 Heat of formation + Delta-G solvation = -48.200472 kcal Electronic energy + Delta-G solvation = -12078.251746 eV Core-core repulsion = 9453.713653 eV Total energy + Delta-G solvation = -2624.538092 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.52414 -37.81389 -35.32682 -34.30863 -31.03076 -29.43120 -28.81824 -24.99004 -21.62823 -21.28880 -18.35903 -16.22042 -15.69295 -15.08223 -14.36931 -14.17792 -13.68993 -13.06146 -12.60877 -12.34488 -12.11930 -11.37478 -11.17804 -11.00413 -10.78913 -10.50323 -10.12899 -9.81698 -9.63768 -9.59065 -9.07482 -7.89689 -7.73935 -7.55825 -4.85469 2.10398 2.17964 2.44766 3.04003 3.10402 3.26247 3.34384 3.83815 4.13558 4.82596 5.49759 5.78321 5.91451 6.37415 6.62622 6.88354 6.92513 7.10554 7.34709 7.56675 7.72904 8.16662 8.34977 9.70148 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.029392 B = 0.007265 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.409954 B = 3853.243113 C = 4667.640646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.035 3.965 3 Si 1.070 2.930 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.476 4.476 8 H 0.097 0.903 9 C 0.071 3.929 10 C -0.003 4.003 11 F -0.138 7.138 12 C -0.080 4.080 13 C -0.196 4.196 14 Br -0.092 7.092 15 C -0.043 4.043 16 C -0.119 4.119 17 Cl -0.094 7.094 18 H 0.297 0.703 19 H 0.116 0.884 20 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 -5.628 1.910 5.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.191 4.191 3 Si 0.892 3.108 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.501 4.501 8 H 0.115 0.885 9 C 0.066 3.934 10 C -0.024 4.024 11 F -0.117 7.117 12 C -0.101 4.101 13 C -0.276 4.276 14 Br -0.008 7.008 15 C -0.064 4.064 16 C -0.148 4.148 17 Cl -0.065 7.065 18 H 0.110 0.890 19 H 0.135 0.865 20 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.108 -4.509 2.103 4.977 hybrid contribution 0.295 -1.311 -0.165 1.354 sum 0.187 -5.820 1.938 6.137 Atomic orbital electron populations 1.70459 1.08267 1.34263 1.23902 1.27231 0.95473 1.04809 0.91582 0.83544 0.75745 0.73232 0.78326 1.19438 1.19526 1.19743 1.20737 1.04456 0.93410 1.31487 0.88507 1.17450 0.92005 0.92692 0.91238 1.17370 1.07971 0.79872 0.97218 1.91409 1.93115 1.42235 1.84967 1.20464 0.99395 0.90557 0.99669 1.20180 1.12617 0.89851 1.04939 1.96407 1.83047 1.37255 1.84083 1.20338 0.95173 0.96980 0.93871 1.20231 1.05823 0.93950 0.94761 1.98235 1.66978 1.97926 1.43406 0.88981 0.86550 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.02 12.04 55.55 0.67 -18.35 14 2 C 0.04 0.85 4.24 -17.33 -0.07 0.78 14 3 Si 1.07 20.64 30.01 -169.99 -5.10 15.54 14 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 14 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 14 6 H -0.27 -4.92 7.11 56.52 0.40 -4.52 14 7 C -0.48 -11.71 8.21 -37.82 -0.31 -12.02 14 8 H 0.10 2.32 7.46 -52.49 -0.39 1.93 14 9 C 0.07 1.75 5.07 -106.72 -0.54 1.21 14 10 C 0.00 -0.07 6.19 -38.67 -0.24 -0.31 14 11 F -0.14 -3.49 14.32 2.25 0.03 -3.46 14 12 C -0.08 -1.74 9.73 -39.56 -0.39 -2.12 14 13 C -0.20 -4.04 6.24 -39.23 -0.24 -4.29 14 14 Br -0.09 -1.58 33.68 -68.01 -2.29 -3.87 14 15 C -0.04 -0.89 9.54 -39.59 -0.38 -1.27 14 16 C -0.12 -2.69 6.37 -38.79 -0.25 -2.94 14 17 Cl -0.09 -1.92 27.73 -51.86 -1.44 -3.35 14 18 H 0.30 7.78 7.11 -40.82 -0.29 7.49 14 19 H 0.12 2.33 8.06 -52.49 -0.42 1.90 14 20 H 0.12 2.18 8.06 -52.49 -0.42 1.75 14 LS Contribution 225.38 15.07 3.40 3.40 Total: -1.00 -24.49 225.38 -7.47 -31.96 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -0.32 Total: -0.90 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -2.42 Total: -20.97 kcal Atomic # 7 Polarization: -19.02 SS G_CDS: 0.67 Total: -18.35 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.03 Total: -3.46 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.10 Total: 15.54 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -1.44 Total: -3.35 kcal Atomic # 35 Polarization: -1.58 SS G_CDS: -2.29 Total: -3.87 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -24.49 -7.47 -31.96 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238569383.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.238 kcal (2) G-P(sol) polarization free energy of solvation -24.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds