Wall clock time and date at job start Mon Mar 30 2020 07:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.08993 * 110.59256 * 57.00862 * 9 7 2 11 11 C 1.51566 * 110.65998 * 293.83878 * 9 7 2 12 12 O 1.20833 * 126.62417 * 61.53757 * 11 9 7 13 13 O 1.33820 * 106.75154 * 241.55745 * 11 9 7 14 14 C 1.35488 * 113.18460 * 359.97438 * 13 11 9 15 15 C 1.39377 * 130.44184 * 180.02562 * 14 13 11 16 16 C 1.37964 * 120.31347 * 179.97438 * 15 14 13 17 17 C 1.38197 * 120.48292 * 0.02562 * 16 15 14 18 18 C 1.38904 * 119.66278 * 0.02562 * 17 16 15 19 19 O 1.35905 * 120.11423 * 179.97438 * 18 17 16 20 20 C 1.38111 * 119.77181 * 359.94747 * 18 17 16 21 21 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 22 22 H 1.07996 * 119.84531 * 359.97438 * 15 14 13 23 23 H 1.08000 * 119.75849 * 180.02562 * 16 15 14 24 24 H 1.07998 * 120.16666 * 180.02562 * 17 16 15 25 25 H 0.96695 * 114.00029 * 269.95804 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5778 -2.5532 -0.8561 11 6 0.4876 -2.6760 1.2969 12 8 -0.3916 -1.9626 1.7190 13 8 0.9758 -3.7744 1.8850 14 6 1.9618 -4.3685 1.1705 15 6 2.7098 -5.5133 1.4402 16 6 3.6772 -5.9380 0.5530 17 6 3.9170 -5.2348 -0.6123 18 6 3.1779 -4.0921 -0.8901 19 8 3.4064 -3.3933 -2.0331 20 6 2.2095 -3.6687 -0.0010 21 1 -0.4850 0.8401 0.0004 22 1 2.5313 -6.0704 2.3480 23 1 4.2513 -6.8265 0.7707 24 1 4.6753 -5.5722 -1.3034 25 1 4.0737 -2.6993 -1.9430 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238788812.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:27 Heat of formation + Delta-G solvation = -98.429909 kcal Electronic energy + Delta-G solvation = -14646.811272 eV Core-core repulsion = 11976.667982 eV Total energy + Delta-G solvation = -2670.143290 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.02934 -39.92244 -38.58741 -36.93635 -35.46152 -32.95225 -30.55564 -29.25698 -26.45023 -24.10932 -22.60380 -22.42033 -19.67828 -18.58321 -18.25414 -17.65832 -17.17454 -16.94561 -16.31838 -15.65713 -15.41747 -14.66221 -14.47003 -14.30636 -13.96264 -13.47036 -12.86714 -12.77712 -12.59634 -12.33303 -12.05332 -11.76522 -11.53678 -10.98358 -10.65532 -9.56359 -9.33431 -8.26578 -6.47683 0.18884 0.32519 1.34884 1.41037 1.46565 1.51057 1.83087 2.34329 2.70006 2.97253 3.36667 3.51516 3.87314 4.14662 4.25046 4.54117 4.63023 4.92001 4.97311 5.32816 5.41445 5.48233 5.54874 5.70521 5.85328 6.24978 6.54263 6.71497 6.93948 7.21006 8.78151 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.031643 B = 0.011926 C = 0.009471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.647570 B = 2347.184811 C = 2955.706336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.011 3.989 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.533 4.533 8 H 0.077 0.923 9 C 0.036 3.964 10 H 0.051 0.949 11 C 0.478 3.522 12 O -0.454 6.454 13 O -0.310 6.310 14 C 0.071 3.929 15 C -0.126 4.126 16 C -0.066 4.066 17 C -0.153 4.153 18 C 0.144 3.856 19 O -0.504 6.504 20 C -0.188 4.188 21 H 0.266 0.734 22 H 0.157 0.843 23 H 0.188 0.812 24 H 0.168 0.832 25 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.047 -10.138 -0.855 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.193 4.193 3 Si 0.798 3.202 4 H -0.211 1.211 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.570 4.570 8 H 0.095 0.905 9 C 0.016 3.984 10 H 0.068 0.932 11 C 0.321 3.679 12 O -0.336 6.336 13 O -0.225 6.225 14 C 0.028 3.972 15 C -0.144 4.144 16 C -0.083 4.083 17 C -0.171 4.171 18 C 0.099 3.901 19 O -0.316 6.316 20 C -0.189 4.189 21 H 0.075 0.925 22 H 0.175 0.825 23 H 0.205 0.795 24 H 0.186 0.814 25 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 9.925 -10.108 -0.693 14.183 hybrid contribution -0.193 1.705 0.258 1.735 sum 9.732 -8.403 -0.436 12.865 Atomic orbital electron populations 1.70207 1.07773 1.28269 1.45903 1.26127 0.95833 1.03784 0.93569 0.85346 0.78158 0.77141 0.79517 1.21092 1.19553 1.17653 1.20741 0.93157 0.87968 1.55108 0.90455 1.18579 0.93189 0.94681 0.91932 0.93154 1.24656 0.80061 0.75791 0.87433 1.90634 1.29075 1.42970 1.70956 1.83979 1.47412 1.40154 1.50965 1.19612 0.90602 0.96196 0.90742 1.20685 0.96829 0.93521 1.03381 1.21211 0.95463 1.00112 0.91528 1.21738 1.01022 0.95061 0.99258 1.17859 0.93639 0.93484 0.85095 1.84680 1.64793 1.52055 1.30095 1.21211 1.02165 0.98490 0.97074 0.92472 0.82493 0.79476 0.81414 0.73571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.11 11.41 21.45 0.24 -53.86 15 2 C 0.01 0.61 5.33 84.66 0.45 1.06 15 3 Si 0.98 43.18 29.54 68.60 2.03 45.20 15 4 H -0.29 -12.61 7.11 99.48 0.71 -11.90 15 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 6 H -0.25 -10.27 7.11 99.48 0.71 -9.56 15 7 C -0.53 -29.23 8.57 25.60 0.22 -29.01 15 8 H 0.08 3.94 7.77 -2.91 -0.02 3.92 15 9 C 0.04 1.92 2.89 -12.59 -0.04 1.88 15 10 H 0.05 3.00 8.14 -2.39 -0.02 2.98 15 11 C 0.48 26.80 8.11 71.51 0.58 27.38 15 12 O -0.45 -28.35 16.14 21.53 0.35 -28.00 15 13 O -0.31 -15.03 10.43 13.14 0.14 -14.89 15 14 C 0.07 2.88 7.20 22.65 0.16 3.05 15 15 C -0.13 -3.50 10.06 22.48 0.23 -3.28 15 16 C -0.07 -1.37 10.01 22.19 0.22 -1.15 15 17 C -0.15 -3.71 10.02 22.42 0.22 -3.49 15 18 C 0.14 5.01 6.69 22.40 0.15 5.16 15 19 O -0.50 -17.14 13.50 -92.48 -1.25 -18.39 15 20 C -0.19 -8.14 5.58 -19.62 -0.11 -8.25 15 21 H 0.27 15.46 8.31 -92.70 -0.77 14.69 15 22 H 0.16 3.40 8.06 -2.91 -0.02 3.38 15 23 H 0.19 1.97 8.06 -2.91 -0.02 1.95 15 24 H 0.17 2.84 8.06 -2.91 -0.02 2.82 15 25 H 0.41 10.70 9.06 -74.06 -0.67 10.03 15 Total: -1.00 -73.43 234.26 4.16 -69.27 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.57 Total: 7.32 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 2.09 Total: -6.65 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.24 Total: -53.86 kcal Atomic # 8 Polarization: -60.51 SS G_CDS: -0.76 Total: -61.28 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -73.43 4.16 -69.27 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238788812.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.164 kcal (2) G-P(sol) polarization free energy of solvation -73.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds