Wall clock time and date at job start Mon Mar 30 2020 07:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00208 * 2 1 4 4 H 1.48500 * 109.47303 * 270.00412 * 3 2 1 5 5 H 1.48503 * 109.47012 * 30.00136 * 3 2 1 6 6 H 1.48499 * 109.47328 * 150.00046 * 3 2 1 7 7 C 1.37880 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99720 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00131 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.48185 * 59.97909 * 9 7 2 11 11 O 1.42898 * 109.47975 * 299.94324 * 9 7 2 12 12 C 1.42905 * 114.09686 * 178.85956 * 11 9 7 13 13 H 1.09004 * 109.48734 * 301.16991 * 12 11 9 14 14 C 1.52999 * 109.48015 * 181.14116 * 12 11 9 15 15 O 1.42903 * 109.47256 * 65.06094 * 14 12 11 16 16 C 1.53086 * 109.41717 * 61.15936 * 12 11 9 17 17 H 1.08994 * 109.52726 * 182.48335 * 16 12 11 18 18 O 1.42903 * 109.52277 * 62.29568 * 16 12 11 19 19 C 1.53180 * 109.16424 * 302.39532 * 16 12 11 20 20 H 1.09009 * 109.53998 * 297.11135 * 19 16 12 21 21 O 1.42898 * 109.54730 * 176.84496 * 19 16 12 22 22 C 1.53092 * 109.47998 * 180.02562 * 9 7 2 23 23 H 1.09001 * 109.57781 * 57.65273 * 22 9 7 24 24 O 1.42904 * 109.52241 * 297.49489 * 22 9 7 25 25 H 0.96994 * 119.99875 * 359.97438 * 1 2 3 26 26 H 0.96695 * 114.00062 * 300.02698 * 10 9 7 27 27 H 1.08997 * 109.47286 * 305.05654 * 14 12 11 28 28 H 1.09008 * 109.47201 * 185.05435 * 14 12 11 29 29 H 0.96700 * 114.00311 * 180.02562 * 15 14 12 30 30 H 0.96703 * 113.99660 * 60.00254 * 18 16 12 31 31 H 0.96701 * 113.99651 * 59.99848 * 21 19 16 32 32 H 0.96699 * 113.99873 * 180.31162 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4285 -2.5746 -1.1667 11 8 0.4308 -2.5759 1.1671 12 6 -0.3505 -3.7693 1.2540 13 1 -0.9991 -3.8436 0.3810 14 6 -1.2049 -3.7286 2.5225 15 8 -2.1530 -2.6639 2.4243 16 6 0.5797 -4.9841 1.3038 17 1 -0.0147 -5.8975 1.3256 18 8 1.3936 -4.9146 2.4763 19 6 1.4734 -4.9845 0.0597 20 1 0.8560 -5.0874 -0.8327 21 8 2.3952 -6.0738 0.1336 22 6 2.2456 -3.6630 -0.0005 23 1 2.9006 -3.5836 0.8671 24 8 3.0286 -3.6220 -1.1953 25 1 -0.4850 0.8400 0.0004 26 1 -0.2267 -1.8666 -1.2323 27 1 -0.5629 -3.5647 3.3879 28 1 -1.7327 -4.6757 2.6357 29 1 -2.7298 -2.5784 3.1958 30 1 0.8922 -4.9057 3.3031 31 1 1.9740 -6.9429 0.1817 32 1 3.6781 -4.3350 -1.2645 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253697058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:45 Heat of formation + Delta-G solvation = -283.747779 kcal Electronic energy + Delta-G solvation = -20706.527515 eV Core-core repulsion = 17246.819508 eV Total energy + Delta-G solvation = -3459.708007 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.102 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.63343 -36.80586 -36.43655 -35.66791 -34.76049 -33.53772 -32.06963 -30.12003 -29.35677 -26.58742 -24.62278 -22.17525 -21.10545 -19.42396 -17.62343 -17.38315 -17.11643 -16.79310 -16.38397 -15.54940 -14.85219 -14.66082 -14.52228 -14.10197 -13.76658 -13.24826 -13.05566 -12.97167 -12.76701 -11.96537 -11.64412 -11.46950 -11.08023 -10.91308 -10.71722 -10.39673 -10.27880 -10.03768 -9.81309 -9.60838 -9.40014 -9.12517 -8.74505 -8.47151 -8.40882 -6.11262 -4.23689 3.31363 3.36914 3.41906 4.17660 4.37271 4.45401 4.50316 4.79651 5.01764 5.13910 5.27375 5.38575 5.45955 5.51981 5.62408 5.77919 5.91357 5.99836 6.21719 6.38519 6.50044 7.28439 7.76754 7.84769 7.85930 7.99806 8.08742 8.31062 8.54053 8.88141 9.41728 9.56687 10.94895 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.021074 B = 0.011233 C = 0.008344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.340655 B = 2492.090947 C = 3355.061843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.080 3.920 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.073 0.927 9 C 0.405 3.595 10 O -0.594 6.594 11 O -0.340 6.340 12 C 0.051 3.949 13 H 0.068 0.932 14 C 0.087 3.913 15 O -0.546 6.546 16 C 0.052 3.948 17 H 0.053 0.947 18 O -0.543 6.543 19 C 0.078 3.922 20 H 0.081 0.919 21 O -0.560 6.560 22 C 0.126 3.874 23 H 0.071 0.929 24 O -0.538 6.538 25 H 0.267 0.733 26 H 0.386 0.614 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.368 0.632 30 H 0.368 0.632 31 H 0.370 0.630 32 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 -10.044 4.728 11.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.126 4.126 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.560 4.560 8 H 0.091 0.909 9 C 0.330 3.670 10 O -0.405 6.405 11 O -0.261 6.261 12 C -0.008 4.008 13 H 0.085 0.915 14 C 0.009 3.991 15 O -0.349 6.349 16 C -0.008 4.008 17 H 0.071 0.929 18 O -0.348 6.348 19 C 0.019 3.981 20 H 0.098 0.902 21 O -0.365 6.365 22 C 0.066 3.934 23 H 0.089 0.911 24 O -0.340 6.340 25 H 0.077 0.923 26 H 0.238 0.762 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.213 0.787 30 H 0.214 0.786 31 H 0.216 0.784 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.850 -9.188 3.573 10.030 hybrid contribution -0.896 -0.066 1.185 1.487 sum -2.746 -9.254 4.758 10.762 Atomic orbital electron populations 1.69739 1.05870 1.27373 1.47343 1.25103 0.95018 0.99651 0.92831 0.86395 0.79845 0.82299 0.78233 1.20342 1.21037 1.19638 1.21160 0.93349 0.88734 1.52781 0.90906 1.19708 0.82053 0.90775 0.74470 1.86207 1.53098 1.55784 1.45460 1.88654 1.57287 1.34847 1.45311 1.22434 0.92639 0.88249 0.97504 0.91458 1.22059 0.90350 0.89100 0.97638 1.86755 1.50138 1.53481 1.44572 1.23230 0.92628 0.97209 0.87710 0.92879 1.86626 1.36058 1.97145 1.14948 1.22909 0.91569 0.89311 0.94327 0.90154 1.86496 1.36326 1.16593 1.97045 1.22292 0.92709 0.90435 0.87944 0.91110 1.86683 1.52804 1.53146 1.41376 0.92306 0.76168 0.93307 0.93867 0.78698 0.78569 0.78410 0.79335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.85 11.20 55.43 0.62 -24.22 16 2 C 0.08 2.27 5.32 -17.82 -0.09 2.17 16 3 Si 0.91 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -15.30 8.19 -34.44 -0.28 -15.58 16 8 H 0.07 2.15 7.74 -52.49 -0.41 1.74 16 9 C 0.41 10.89 0.68 -27.84 -0.02 10.87 16 10 O -0.59 -16.26 11.61 -63.99 -0.74 -17.00 16 11 O -0.34 -8.80 9.28 -65.27 -0.61 -9.41 16 12 C 0.05 1.04 2.54 -26.69 -0.07 0.97 16 13 H 0.07 1.45 7.56 -51.93 -0.39 1.06 16 14 C 0.09 1.40 6.21 37.16 0.23 1.63 16 15 O -0.55 -9.85 13.63 -40.00 -0.54 -10.39 16 16 C 0.05 0.91 3.03 -26.59 -0.08 0.83 16 17 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 18 O -0.54 -9.41 12.52 -55.77 -0.70 -10.11 16 19 C 0.08 1.51 2.85 -26.55 -0.08 1.44 16 20 H 0.08 1.60 7.82 -51.92 -0.41 1.19 16 21 O -0.56 -9.35 12.78 -55.16 -0.71 -10.06 16 22 C 0.13 3.00 2.35 -26.59 -0.06 2.94 16 23 H 0.07 1.78 7.83 -51.93 -0.41 1.37 16 24 O -0.54 -12.58 12.87 -54.98 -0.71 -13.29 16 25 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.39 10.93 7.18 45.56 0.33 11.26 16 27 H 0.05 0.73 7.02 -51.93 -0.36 0.37 16 28 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.37 4.36 9.12 45.56 0.42 4.77 16 30 H 0.37 4.75 7.43 45.56 0.34 5.09 16 31 H 0.37 4.29 9.08 45.56 0.41 4.71 16 32 H 0.36 6.75 8.71 45.56 0.40 7.15 16 LS Contribution 269.99 15.07 4.07 4.07 Total: -1.00 -36.08 269.99 -4.85 -40.94 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -0.06 Total: 27.38 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -0.45 Total: 5.26 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.62 Total: -24.22 kcal Atomic # 8 Polarization: -66.26 SS G_CDS: -4.00 Total: -70.26 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -36.08 -4.85 -40.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253697058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -242.812 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -278.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -283.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds