Wall clock time and date at job start Mon Mar 30 2020 07:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00026 * 2 1 4 4 H 1.48497 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46972 * 300.00432 * 3 2 1 6 6 H 1.48504 * 109.47205 * 60.00315 * 3 2 1 7 7 C 1.37873 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00294 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00004 * 359.97438 * 7 2 1 10 10 O 1.42894 * 109.48246 * 59.97734 * 9 7 2 11 11 O 1.42901 * 109.47962 * 299.94176 * 9 7 2 12 12 C 1.42902 * 114.10063 * 178.85972 * 11 9 7 13 13 H 1.09008 * 109.48174 * 301.17685 * 12 11 9 14 14 C 1.52998 * 109.48610 * 181.15520 * 12 11 9 15 15 O 1.42901 * 109.47198 * 64.99447 * 14 12 11 16 16 C 1.53092 * 109.41481 * 61.15929 * 12 11 9 17 17 H 1.08998 * 109.52177 * 182.48935 * 16 12 11 18 18 O 1.42896 * 109.52343 * 62.29983 * 16 12 11 19 19 C 1.53178 * 109.16092 * 302.39243 * 16 12 11 20 20 H 1.09004 * 109.62022 * 297.06888 * 19 16 12 21 21 O 1.42905 * 109.54437 * 176.84762 * 19 16 12 22 22 C 1.53091 * 109.48110 * 180.02562 * 9 7 2 23 23 H 1.08995 * 109.52138 * 297.49698 * 22 9 7 24 24 O 1.42900 * 109.52513 * 57.68358 * 22 9 7 25 25 H 0.96999 * 120.00154 * 359.97438 * 1 2 3 26 26 H 0.96707 * 114.00131 * 300.02170 * 10 9 7 27 27 H 1.08994 * 109.47652 * 185.00413 * 14 12 11 28 28 H 1.09001 * 109.47049 * 305.00155 * 14 12 11 29 29 H 0.96699 * 113.99813 * 180.02562 * 15 14 12 30 30 H 0.96699 * 114.00388 * 60.31569 * 18 16 12 31 31 H 0.96705 * 113.99788 * 60.44472 * 21 19 16 32 32 H 0.96697 * 114.00406 * 179.68663 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4286 -2.5746 -1.1666 11 8 0.4309 -2.5759 1.1672 12 6 -0.3504 -3.7692 1.2541 13 1 -0.9989 -3.8436 0.3811 14 6 -1.2051 -3.7285 2.5225 15 8 -2.1522 -2.6629 2.4246 16 6 0.5799 -4.9841 1.3039 17 1 -0.0146 -5.8974 1.3256 18 8 1.3937 -4.9145 2.4764 19 6 1.4734 -4.9844 0.0597 20 1 0.8572 -5.0881 -0.8334 21 8 2.3953 -6.0738 0.1335 22 6 2.2457 -3.6629 -0.0005 23 1 2.8429 -3.6316 -0.9118 24 8 3.1033 -3.5582 1.1377 25 1 -0.4850 0.8400 0.0004 26 1 -0.2268 -1.8665 -1.2322 27 1 -1.7334 -4.6751 2.6352 28 1 -0.5630 -3.5655 3.3881 29 1 -2.7290 -2.5773 3.1960 30 1 0.8926 -4.9105 3.3034 31 1 1.9741 -6.9434 0.1749 32 1 3.7572 -4.2674 1.2041 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253697071.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:47 Heat of formation + Delta-G solvation = -279.768373 kcal Electronic energy + Delta-G solvation = -20859.392902 eV Core-core repulsion = 17399.857455 eV Total energy + Delta-G solvation = -3459.535447 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.102 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.57770 -36.67807 -36.35574 -35.43267 -34.66774 -33.54663 -32.10097 -30.02402 -29.19648 -26.57503 -24.69640 -22.13767 -21.06688 -19.23404 -17.52029 -17.26616 -17.07774 -16.67066 -16.16509 -15.55905 -15.13950 -14.75429 -14.32922 -13.83315 -13.54817 -13.32403 -12.97868 -12.81256 -12.62826 -11.98109 -11.58920 -11.48074 -11.00384 -10.93003 -10.69243 -10.32057 -10.24885 -9.95559 -9.73942 -9.63527 -9.33508 -8.93027 -8.74053 -8.45037 -8.23410 -6.11464 -4.23278 3.29671 3.37485 3.43816 4.22783 4.39533 4.56038 4.61694 4.84279 5.03592 5.16190 5.22166 5.42889 5.55947 5.62269 5.74987 5.82956 5.93284 6.17314 6.38915 6.47476 6.55519 7.04174 7.80823 7.86247 8.00129 8.07006 8.10727 8.39389 8.69896 8.91429 9.40034 9.53559 10.94936 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.010973 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.945758 B = 2551.106737 C = 3233.262579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.079 3.921 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.074 0.926 9 C 0.404 3.596 10 O -0.605 6.605 11 O -0.333 6.333 12 C 0.054 3.946 13 H 0.061 0.939 14 C 0.087 3.913 15 O -0.547 6.547 16 C 0.058 3.942 17 H 0.045 0.955 18 O -0.527 6.527 19 C 0.077 3.923 20 H 0.077 0.923 21 O -0.560 6.560 22 C 0.125 3.875 23 H 0.055 0.945 24 O -0.518 6.518 25 H 0.266 0.734 26 H 0.394 0.606 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.367 0.633 30 H 0.361 0.639 31 H 0.370 0.630 32 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.734 -10.046 3.387 10.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.126 4.126 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.092 0.908 9 C 0.329 3.671 10 O -0.419 6.419 11 O -0.254 6.254 12 C -0.006 4.006 13 H 0.079 0.921 14 C 0.009 3.991 15 O -0.350 6.350 16 C -0.003 4.003 17 H 0.063 0.937 18 O -0.330 6.330 19 C 0.018 3.982 20 H 0.095 0.905 21 O -0.365 6.365 22 C 0.064 3.936 23 H 0.073 0.927 24 O -0.321 6.321 25 H 0.076 0.924 26 H 0.247 0.753 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.212 0.788 30 H 0.206 0.794 31 H 0.216 0.784 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.673 -9.176 2.455 9.645 hybrid contribution -0.945 -0.066 0.859 1.279 sum -2.617 -9.242 3.314 10.162 Atomic orbital electron populations 1.69743 1.05880 1.27259 1.47557 1.25118 0.95001 0.99683 0.92831 0.86347 0.80265 0.82664 0.77540 1.19477 1.20852 1.20756 1.21213 0.93477 0.88716 1.52361 0.90787 1.19615 0.82070 0.90972 0.74416 1.86059 1.53470 1.56552 1.45786 1.88635 1.57444 1.34477 1.44807 1.22387 0.92509 0.88703 0.97020 0.92074 1.22059 0.90260 0.88847 0.97933 1.86748 1.50223 1.53532 1.44533 1.23034 0.92519 0.96551 0.88166 0.93715 1.86730 1.35050 1.97029 1.14191 1.22878 0.91570 0.89294 0.94504 0.90489 1.86472 1.36341 1.16546 1.97116 1.21883 0.92155 0.90277 0.89239 0.92669 1.86635 1.48668 1.51078 1.45672 0.92375 0.75281 0.94088 0.93266 0.78810 0.79376 0.78412 0.79262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.84 11.20 55.43 0.62 -24.22 16 2 C 0.08 2.25 5.32 -17.82 -0.09 2.15 16 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -15.14 8.11 -34.44 -0.28 -15.42 16 8 H 0.07 2.18 7.64 -52.49 -0.40 1.78 16 9 C 0.40 10.78 0.69 -27.84 -0.02 10.76 16 10 O -0.60 -15.93 11.75 -59.04 -0.69 -16.62 16 11 O -0.33 -8.83 9.21 -67.33 -0.62 -9.45 16 12 C 0.05 1.12 2.54 -26.68 -0.07 1.05 16 13 H 0.06 1.34 7.56 -51.92 -0.39 0.95 16 14 C 0.09 1.48 6.21 37.16 0.23 1.71 16 15 O -0.55 -10.23 13.62 -40.06 -0.55 -10.78 16 16 C 0.06 1.03 3.03 -26.59 -0.08 0.94 16 17 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 18 O -0.53 -9.50 11.27 -65.34 -0.74 -10.24 16 19 C 0.08 1.47 3.04 -26.55 -0.08 1.39 16 20 H 0.08 1.46 7.82 -51.93 -0.41 1.05 16 21 O -0.56 -9.25 12.57 -57.79 -0.73 -9.98 16 22 C 0.13 2.93 2.70 -26.59 -0.07 2.86 16 23 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 24 O -0.52 -12.17 10.97 -65.34 -0.72 -12.89 16 25 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.39 10.78 7.18 45.56 0.33 11.10 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.80 7.02 -51.93 -0.36 0.44 16 29 H 0.37 4.59 9.12 45.56 0.42 5.01 16 30 H 0.36 5.12 7.44 45.56 0.34 5.46 16 31 H 0.37 4.27 9.09 45.56 0.41 4.69 16 32 H 0.36 7.21 8.53 45.56 0.39 7.60 16 LS Contribution 267.23 15.07 4.03 4.03 Total: -1.00 -35.43 267.23 -4.96 -40.39 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.08 Total: 27.48 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -0.46 Total: 5.45 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.62 Total: -24.22 kcal Atomic # 8 Polarization: -65.92 SS G_CDS: -4.04 Total: -69.96 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -35.43 -4.96 -40.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253697071.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -239.381 kcal (2) G-P(sol) polarization free energy of solvation -35.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -279.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds