Wall clock time and date at job start Mon Mar 30 2020 07:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00026 * 2 1 4 4 H 1.48497 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46972 * 300.00432 * 3 2 1 6 6 H 1.48504 * 109.47205 * 60.00315 * 3 2 1 7 7 C 1.37873 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00294 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00004 * 359.97438 * 7 2 1 10 10 O 1.42894 * 109.48246 * 59.97734 * 9 7 2 11 11 O 1.42901 * 109.47962 * 299.94176 * 9 7 2 12 12 C 1.42902 * 114.10063 * 178.85972 * 11 9 7 13 13 H 1.09008 * 109.48174 * 301.17685 * 12 11 9 14 14 C 1.52998 * 109.48610 * 181.15520 * 12 11 9 15 15 O 1.42901 * 109.47198 * 64.99447 * 14 12 11 16 16 C 1.53092 * 109.41481 * 61.15929 * 12 11 9 17 17 H 1.08998 * 109.52177 * 182.48935 * 16 12 11 18 18 O 1.42896 * 109.52343 * 62.29983 * 16 12 11 19 19 C 1.53178 * 109.16092 * 302.39243 * 16 12 11 20 20 H 1.09004 * 109.62022 * 297.06888 * 19 16 12 21 21 O 1.42905 * 109.54437 * 176.84762 * 19 16 12 22 22 C 1.53091 * 109.48110 * 180.02562 * 9 7 2 23 23 H 1.08995 * 109.52138 * 297.49698 * 22 9 7 24 24 O 1.42900 * 109.52513 * 57.68358 * 22 9 7 25 25 H 0.96999 * 120.00154 * 359.97438 * 1 2 3 26 26 H 0.96707 * 114.00131 * 300.02170 * 10 9 7 27 27 H 1.08994 * 109.47652 * 185.00413 * 14 12 11 28 28 H 1.09001 * 109.47049 * 305.00155 * 14 12 11 29 29 H 0.96699 * 113.99813 * 180.02562 * 15 14 12 30 30 H 0.96699 * 114.00388 * 60.31569 * 18 16 12 31 31 H 0.96705 * 113.99788 * 60.44472 * 21 19 16 32 32 H 0.96697 * 114.00406 * 179.68663 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4286 -2.5746 -1.1666 11 8 0.4309 -2.5759 1.1672 12 6 -0.3504 -3.7692 1.2541 13 1 -0.9989 -3.8436 0.3811 14 6 -1.2051 -3.7285 2.5225 15 8 -2.1522 -2.6629 2.4246 16 6 0.5799 -4.9841 1.3039 17 1 -0.0146 -5.8974 1.3256 18 8 1.3937 -4.9145 2.4764 19 6 1.4734 -4.9844 0.0597 20 1 0.8572 -5.0881 -0.8334 21 8 2.3953 -6.0738 0.1335 22 6 2.2457 -3.6629 -0.0005 23 1 2.8429 -3.6316 -0.9118 24 8 3.1033 -3.5582 1.1377 25 1 -0.4850 0.8400 0.0004 26 1 -0.2268 -1.8665 -1.2322 27 1 -1.7334 -4.6751 2.6352 28 1 -0.5630 -3.5655 3.3881 29 1 -2.7290 -2.5773 3.1960 30 1 0.8926 -4.9105 3.3034 31 1 1.9741 -6.9434 0.1749 32 1 3.7572 -4.2674 1.2041 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253697071.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:46 Heat of formation + Delta-G solvation = -316.404283 kcal Electronic energy + Delta-G solvation = -20860.981554 eV Core-core repulsion = 17399.857455 eV Total energy + Delta-G solvation = -3461.124099 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.20396 -38.12315 -38.05934 -36.86158 -36.33104 -35.39432 -34.23091 -31.56813 -30.92216 -28.40369 -26.40984 -23.83953 -22.67313 -20.92856 -19.18434 -18.96741 -18.59236 -18.40984 -17.72602 -17.26945 -16.78451 -16.56317 -15.89004 -15.56355 -15.12693 -15.08854 -14.60393 -14.37074 -14.20650 -13.69540 -13.33255 -13.16767 -12.85346 -12.76816 -12.29921 -12.23173 -12.15545 -11.61116 -11.20161 -11.10995 -11.00315 -10.81242 -10.60581 -10.42672 -9.94762 -8.22986 -6.43925 1.38030 1.39714 1.52944 2.36458 2.77367 2.94121 3.22365 3.26153 3.39003 3.53046 3.79427 3.86050 4.19130 4.26881 4.28660 4.31531 4.51481 4.53436 4.79943 4.88663 4.94122 5.10178 5.68888 6.01190 6.35342 6.75419 6.76641 6.91245 7.01399 7.05139 7.28978 7.45749 8.82062 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.010973 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.945758 B = 2551.106737 C = 3233.262579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.036 3.964 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.056 0.944 9 C 0.396 3.604 10 O -0.604 6.604 11 O -0.366 6.366 12 C 0.037 3.963 13 H 0.042 0.958 14 C 0.089 3.911 15 O -0.584 6.584 16 C 0.068 3.932 17 H 0.095 0.905 18 O -0.542 6.542 19 C 0.086 3.914 20 H 0.077 0.923 21 O -0.562 6.562 22 C 0.122 3.878 23 H 0.038 0.962 24 O -0.533 6.533 25 H 0.269 0.731 26 H 0.385 0.615 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.391 0.609 30 H 0.378 0.622 31 H 0.396 0.604 32 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.149 -11.350 4.334 12.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.168 4.168 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.203 1.203 7 C -0.593 4.593 8 H 0.075 0.925 9 C 0.321 3.679 10 O -0.417 6.417 11 O -0.287 6.287 12 C -0.022 4.022 13 H 0.060 0.940 14 C 0.012 3.988 15 O -0.391 6.391 16 C 0.008 3.992 17 H 0.113 0.887 18 O -0.348 6.348 19 C 0.027 3.973 20 H 0.095 0.905 21 O -0.370 6.370 22 C 0.061 3.939 23 H 0.056 0.944 24 O -0.338 6.338 25 H 0.078 0.922 26 H 0.237 0.763 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.240 0.760 30 H 0.226 0.774 31 H 0.246 0.754 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.104 -10.527 3.428 11.269 hybrid contribution -0.836 0.262 0.601 1.062 sum -2.940 -10.264 4.029 11.412 Atomic orbital electron populations 1.69833 1.06864 1.28069 1.47697 1.25856 0.95913 1.02717 0.92271 0.85392 0.78759 0.78662 0.78004 1.19658 1.19406 1.20349 1.21471 0.93094 0.90990 1.53708 0.92536 1.19600 0.82552 0.91412 0.74360 1.86043 1.53278 1.55938 1.46404 1.88498 1.58182 1.37850 1.44179 1.22819 0.92816 0.88168 0.98394 0.93976 1.22158 0.90157 0.90668 0.95851 1.86675 1.51138 1.54658 1.46662 1.22929 0.91794 0.96965 0.87474 0.88706 1.86689 1.35978 1.97049 1.15083 1.22505 0.91121 0.88061 0.95650 0.90517 1.86415 1.36063 1.17434 1.97095 1.21678 0.91712 0.92014 0.88475 0.94386 1.86586 1.49313 1.52276 1.45607 0.92150 0.76316 0.89017 0.92769 0.75990 0.77358 0.75423 0.77720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.68 11.20 21.45 0.24 -51.44 16 2 C 0.04 2.07 5.32 84.65 0.45 2.52 16 3 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.56 -33.23 8.11 25.60 0.21 -33.02 16 8 H 0.06 3.46 7.64 -2.91 -0.02 3.43 16 9 C 0.40 21.53 0.69 29.88 0.02 21.55 16 10 O -0.60 -32.72 11.75 -126.21 -1.48 -34.20 16 11 O -0.37 -19.51 9.21 -118.28 -1.09 -20.60 16 12 C 0.04 1.50 2.54 30.62 0.08 1.57 16 13 H 0.04 1.83 7.56 -2.38 -0.02 1.81 16 14 C 0.09 2.78 6.21 71.98 0.45 3.23 16 15 O -0.58 -20.99 13.62 -144.36 -1.97 -22.95 16 16 C 0.07 2.23 3.03 30.68 0.09 2.32 16 17 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 18 O -0.54 -17.95 11.27 -120.19 -1.35 -19.30 16 19 C 0.09 3.16 3.04 30.71 0.09 3.25 16 20 H 0.08 2.80 7.82 -2.39 -0.02 2.78 16 21 O -0.56 -16.97 12.57 -127.42 -1.60 -18.58 16 22 C 0.12 5.74 2.70 30.68 0.08 5.82 16 23 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 24 O -0.53 -25.07 10.97 -120.19 -1.32 -26.39 16 25 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 26 H 0.38 21.86 7.18 -74.05 -0.53 21.33 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.05 1.62 7.02 -2.39 -0.02 1.60 16 29 H 0.39 9.05 9.12 -74.06 -0.68 8.37 16 30 H 0.38 9.41 7.44 -74.06 -0.55 8.86 16 31 H 0.40 7.53 9.09 -74.05 -0.67 6.86 16 32 H 0.38 14.75 8.53 -74.06 -0.63 14.12 16 Total: -1.00 -78.02 267.23 -6.92 -84.95 By element: Atomic # 1 Polarization: 55.63 SS G_CDS: -1.85 Total: 53.78 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 1.47 Total: 7.25 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.24 Total: -51.44 kcal Atomic # 8 Polarization: -133.20 SS G_CDS: -8.81 Total: -142.02 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -78.02 -6.92 -84.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253697071.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -231.458 kcal (2) G-P(sol) polarization free energy of solvation -78.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -309.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -316.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds