Wall clock time and date at job start Mon Mar 30 2020 07:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99857 * 2 1 4 4 H 1.48500 * 109.47060 * 269.99554 * 3 2 1 5 5 H 1.48494 * 109.47056 * 29.99550 * 3 2 1 6 6 H 1.48500 * 109.47129 * 149.99812 * 3 2 1 7 7 C 1.37878 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99947 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99741 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.49109 * 59.97896 * 9 7 2 11 11 O 1.42900 * 109.48202 * 299.94114 * 9 7 2 12 12 C 1.42903 * 114.09799 * 178.85745 * 11 9 7 13 13 H 1.09000 * 109.48406 * 301.18330 * 12 11 9 14 14 C 1.52996 * 109.49241 * 181.14797 * 12 11 9 15 15 O 1.42902 * 109.46856 * 65.05707 * 14 12 11 16 16 C 1.53101 * 109.41341 * 61.16062 * 12 11 9 17 17 H 1.08995 * 109.51980 * 182.48325 * 16 12 11 18 18 O 1.42903 * 109.51633 * 62.29685 * 16 12 11 19 19 C 1.53169 * 109.16257 * 302.39403 * 16 12 11 20 20 H 1.09002 * 109.61553 * 176.88718 * 19 16 12 21 21 O 1.42900 * 109.54577 * 297.10983 * 19 16 12 22 22 C 1.53096 * 109.47708 * 180.02562 * 9 7 2 23 23 H 1.09002 * 109.52428 * 57.68793 * 22 9 7 24 24 O 1.42898 * 109.57526 * 297.52891 * 22 9 7 25 25 H 0.96995 * 119.99696 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47420 * 185.05584 * 14 12 11 27 27 H 1.09001 * 109.47631 * 305.05632 * 14 12 11 28 28 H 0.96699 * 113.99963 * 180.02562 * 15 14 12 29 29 H 0.96708 * 113.99556 * 180.31438 * 18 16 12 30 30 H 0.96706 * 114.00420 * 179.55583 * 21 19 16 31 31 H 0.96705 * 114.00100 * 60.15571 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6237 -2.5576 -0.8877 11 8 0.4309 -2.5748 1.1695 12 6 -0.3504 -3.7681 1.2573 13 1 -0.9988 -3.8432 0.3844 14 6 -1.2050 -3.7265 2.5257 15 8 -2.1531 -2.6619 2.4265 16 6 0.5799 -4.9830 1.3081 17 1 -0.0146 -5.8962 1.3307 18 8 1.3938 -4.9123 2.4807 19 6 1.4735 -4.9843 0.0641 20 1 2.1767 -5.8153 0.1196 21 8 0.6642 -5.1203 -1.1057 22 6 2.2458 -3.6629 0.0027 23 1 2.8999 -3.5822 0.8709 24 8 3.0299 -3.6236 -1.1912 25 1 -0.4849 0.8400 -0.0004 26 1 -1.7327 -4.6735 2.6395 27 1 -0.5632 -3.5620 3.3911 28 1 -2.7300 -2.5759 3.1977 29 1 2.0123 -5.6497 2.5751 30 1 1.1654 -5.1219 -1.9328 31 1 3.5449 -2.8119 -1.2971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253749450.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:29 Heat of formation + Delta-G solvation = -237.003248 kcal Electronic energy + Delta-G solvation = -18263.891848 eV Core-core repulsion = 15124.893028 eV Total energy + Delta-G solvation = -3138.998820 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.45249 -36.57536 -35.92050 -35.27715 -34.82541 -32.49655 -30.01498 -29.42412 -26.65658 -24.51417 -22.36624 -20.98707 -19.63328 -17.09317 -16.92524 -16.80246 -16.52691 -16.39582 -15.26603 -14.69501 -14.55946 -14.12523 -13.71232 -13.29350 -13.09333 -12.51920 -12.19392 -12.08814 -11.86935 -11.23818 -11.06804 -10.90328 -10.77638 -10.29756 -9.95828 -9.86598 -9.70042 -9.47959 -9.18921 -8.80921 -8.47297 -7.75244 -5.98777 -4.15591 3.30619 3.37884 3.40030 4.21169 4.41412 4.57007 4.67227 4.90684 5.03600 5.39579 5.45215 5.52816 5.71595 5.79972 5.87773 6.03244 6.07685 6.29852 6.54478 6.58281 6.68634 7.45605 7.81400 7.84239 8.02016 8.17015 8.24874 8.34125 8.76607 9.10903 9.54964 11.07352 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.022934 B = 0.011869 C = 0.008958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.593956 B = 2358.487958 C = 3124.904797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.082 3.918 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.200 3.800 10 H 0.027 0.973 11 O -0.330 6.330 12 C 0.096 3.904 13 H 0.071 0.929 14 C 0.093 3.907 15 O -0.553 6.553 16 C 0.088 3.912 17 H 0.063 0.937 18 O -0.541 6.541 19 C 0.085 3.915 20 H 0.049 0.951 21 O -0.557 6.557 22 C 0.050 3.950 23 H 0.059 0.941 24 O -0.577 6.577 25 H 0.262 0.738 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.365 0.635 29 H 0.368 0.632 30 H 0.385 0.615 31 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 -9.722 2.789 10.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.126 4.126 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.144 3.856 10 H 0.045 0.955 11 O -0.249 6.249 12 C 0.037 3.963 13 H 0.088 0.912 14 C 0.015 3.985 15 O -0.355 6.355 16 C 0.028 3.972 17 H 0.081 0.919 18 O -0.345 6.345 19 C 0.025 3.975 20 H 0.066 0.934 21 O -0.363 6.363 22 C -0.009 4.009 23 H 0.077 0.923 24 O -0.386 6.386 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.210 0.790 29 H 0.213 0.787 30 H 0.233 0.767 31 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.072 -9.425 2.795 9.831 hybrid contribution 1.291 0.522 0.013 1.393 sum 1.363 -8.903 2.808 9.434 Atomic orbital electron populations 1.70071 1.05918 1.26642 1.45106 1.25054 0.94771 0.99216 0.93553 0.86617 0.79949 0.83441 0.78049 1.20515 1.21017 1.19791 1.20811 0.92172 0.89803 1.54886 0.92101 1.20257 0.87621 0.91709 0.85981 0.95545 1.88473 1.56925 1.34302 1.45177 1.21801 0.91190 0.86293 0.97048 0.91178 1.22012 0.89925 0.88435 0.98154 1.86732 1.50358 1.53996 1.44456 1.22384 0.91602 0.99987 0.83213 0.91940 1.86733 1.54987 1.50852 1.41883 1.22502 0.91856 0.96090 0.87014 0.93358 1.86339 1.37369 1.96356 1.16268 1.23133 0.94022 0.96649 0.87099 0.92302 1.86083 1.63581 1.45277 1.43635 0.92781 0.94228 0.92741 0.79014 0.78661 0.76661 0.76346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.67 12.84 55.43 0.71 -24.96 16 2 C 0.08 2.36 5.40 -17.82 -0.10 2.26 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -15.12 8.21 -34.44 -0.28 -15.40 16 8 H 0.06 1.60 7.09 -52.49 -0.37 1.23 16 9 C 0.20 5.31 2.08 -27.83 -0.06 5.25 16 10 H 0.03 0.79 7.82 -51.93 -0.41 0.39 16 11 O -0.33 -9.02 9.33 -51.60 -0.48 -9.50 16 12 C 0.10 2.15 2.56 -26.68 -0.07 2.08 16 13 H 0.07 1.69 7.82 -51.93 -0.41 1.28 16 14 C 0.09 1.78 6.47 37.16 0.24 2.02 16 15 O -0.55 -11.33 13.63 -39.99 -0.54 -11.88 16 16 C 0.09 1.59 3.01 -26.59 -0.08 1.51 16 17 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 18 O -0.54 -9.08 12.07 -42.73 -0.52 -9.59 16 19 C 0.09 1.57 3.25 -26.55 -0.09 1.49 16 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 21 O -0.56 -10.45 12.27 -46.77 -0.57 -11.03 16 22 C 0.05 1.09 2.71 -26.59 -0.07 1.01 16 23 H 0.06 1.31 7.83 -51.93 -0.41 0.90 16 24 O -0.58 -11.50 12.71 -46.77 -0.59 -12.09 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 1.05 7.79 -51.93 -0.40 0.65 16 28 H 0.37 5.16 9.12 45.56 0.42 5.58 16 29 H 0.37 4.17 9.08 45.56 0.41 4.59 16 30 H 0.39 6.22 8.53 45.56 0.39 6.61 16 31 H 0.39 7.15 7.82 45.56 0.36 7.50 16 LS Contribution 263.04 15.07 3.96 3.96 Total: -1.00 -35.64 263.04 -4.38 -40.03 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -0.82 Total: 18.41 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.50 Total: 0.22 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.71 Total: -24.96 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -2.71 Total: -54.09 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -35.64 -4.38 -40.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253749450.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.975 kcal (2) G-P(sol) polarization free energy of solvation -35.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds