Wall clock time and date at job start Mon Mar 30 2020 07:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99857 * 2 1 4 4 H 1.48500 * 109.47060 * 269.99554 * 3 2 1 5 5 H 1.48494 * 109.47056 * 29.99550 * 3 2 1 6 6 H 1.48500 * 109.47129 * 149.99812 * 3 2 1 7 7 C 1.37878 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99947 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99741 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.49109 * 59.97896 * 9 7 2 11 11 O 1.42900 * 109.48202 * 299.94114 * 9 7 2 12 12 C 1.42903 * 114.09799 * 178.85745 * 11 9 7 13 13 H 1.09000 * 109.48406 * 301.18330 * 12 11 9 14 14 C 1.52996 * 109.49241 * 181.14797 * 12 11 9 15 15 O 1.42902 * 109.46856 * 65.05707 * 14 12 11 16 16 C 1.53101 * 109.41341 * 61.16062 * 12 11 9 17 17 H 1.08995 * 109.51980 * 182.48325 * 16 12 11 18 18 O 1.42903 * 109.51633 * 62.29685 * 16 12 11 19 19 C 1.53169 * 109.16257 * 302.39403 * 16 12 11 20 20 H 1.09002 * 109.61553 * 176.88718 * 19 16 12 21 21 O 1.42900 * 109.54577 * 297.10983 * 19 16 12 22 22 C 1.53096 * 109.47708 * 180.02562 * 9 7 2 23 23 H 1.09002 * 109.52428 * 57.68793 * 22 9 7 24 24 O 1.42898 * 109.57526 * 297.52891 * 22 9 7 25 25 H 0.96995 * 119.99696 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47420 * 185.05584 * 14 12 11 27 27 H 1.09001 * 109.47631 * 305.05632 * 14 12 11 28 28 H 0.96699 * 113.99963 * 180.02562 * 15 14 12 29 29 H 0.96708 * 113.99556 * 180.31438 * 18 16 12 30 30 H 0.96706 * 114.00420 * 179.55583 * 21 19 16 31 31 H 0.96705 * 114.00100 * 60.15571 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6237 -2.5576 -0.8877 11 8 0.4309 -2.5748 1.1695 12 6 -0.3504 -3.7681 1.2573 13 1 -0.9988 -3.8432 0.3844 14 6 -1.2050 -3.7265 2.5257 15 8 -2.1531 -2.6619 2.4265 16 6 0.5799 -4.9830 1.3081 17 1 -0.0146 -5.8962 1.3307 18 8 1.3938 -4.9123 2.4807 19 6 1.4735 -4.9843 0.0641 20 1 2.1767 -5.8153 0.1196 21 8 0.6642 -5.1203 -1.1057 22 6 2.2458 -3.6629 0.0027 23 1 2.8999 -3.5822 0.8709 24 8 3.0299 -3.6236 -1.1912 25 1 -0.4849 0.8400 -0.0004 26 1 -1.7327 -4.6735 2.6395 27 1 -0.5632 -3.5620 3.3911 28 1 -2.7300 -2.5759 3.1977 29 1 2.0123 -5.6497 2.5751 30 1 1.1654 -5.1219 -1.9328 31 1 3.5449 -2.8119 -1.2971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253749450.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:29 Heat of formation + Delta-G solvation = -273.592726 kcal Electronic energy + Delta-G solvation = -18265.478487 eV Core-core repulsion = 15124.893028 eV Total energy + Delta-G solvation = -3140.585459 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.103 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.05917 -38.13258 -37.41396 -36.91577 -36.42736 -34.58500 -31.68399 -31.08430 -28.55571 -26.21443 -24.14981 -22.69564 -21.20694 -19.00947 -18.44016 -18.32891 -18.22864 -17.89790 -16.97186 -16.59001 -16.29162 -15.73339 -15.28685 -14.87340 -14.69432 -14.31553 -13.86384 -13.69945 -13.47174 -13.04754 -12.82035 -12.72984 -12.50216 -12.17761 -11.67350 -11.51499 -11.18713 -11.11794 -10.79310 -10.74049 -10.49390 -9.61810 -8.14005 -6.38522 1.40127 1.42656 1.52864 2.38740 2.78441 3.04668 3.21029 3.25776 3.49186 3.67525 3.95162 4.06491 4.26777 4.31516 4.33978 4.43053 4.49772 4.60792 4.85508 4.94818 5.03466 5.37433 5.68729 6.08323 6.54303 6.65705 6.83200 6.85720 7.01665 7.17753 7.38755 8.92934 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.022934 B = 0.011869 C = 0.008958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.593956 B = 2358.487958 C = 3124.904797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.023 3.977 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.073 0.927 9 C 0.200 3.800 10 H -0.022 1.022 11 O -0.366 6.366 12 C 0.079 3.921 13 H 0.039 0.961 14 C 0.096 3.904 15 O -0.588 6.588 16 C 0.100 3.900 17 H 0.099 0.901 18 O -0.553 6.553 19 C 0.085 3.915 20 H 0.090 0.910 21 O -0.569 6.569 22 C 0.060 3.940 23 H 0.056 0.944 24 O -0.571 6.571 25 H 0.260 0.740 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.390 0.610 29 H 0.394 0.606 30 H 0.394 0.606 31 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.304 -10.998 3.550 11.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.181 4.181 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.594 4.594 8 H 0.091 0.909 9 C 0.144 3.856 10 H -0.005 1.005 11 O -0.286 6.286 12 C 0.020 3.980 13 H 0.057 0.943 14 C 0.018 3.982 15 O -0.395 6.395 16 C 0.040 3.960 17 H 0.117 0.883 18 O -0.360 6.360 19 C 0.026 3.974 20 H 0.107 0.893 21 O -0.377 6.377 22 C 0.000 4.000 23 H 0.074 0.926 24 O -0.380 6.380 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.239 0.761 29 H 0.245 0.755 30 H 0.244 0.756 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.361 -10.733 3.561 11.390 hybrid contribution 0.867 0.864 -0.217 1.243 sum 2.228 -9.870 3.345 10.656 Atomic orbital electron populations 1.70252 1.07908 1.27360 1.47106 1.26023 0.95573 1.03361 0.93094 0.85452 0.78627 0.78286 0.78549 1.19274 1.21312 1.18528 1.21331 0.93042 0.90983 1.54093 0.90875 1.20077 0.87822 0.93541 0.84169 1.00479 1.88345 1.57921 1.37562 1.44735 1.22108 0.91825 0.86623 0.97415 0.94329 1.22087 0.89794 0.90020 0.96268 1.86672 1.51228 1.55016 1.46601 1.22146 0.91454 0.98932 0.83468 0.88294 1.86672 1.55681 1.52819 1.40874 1.22646 0.92276 0.95365 0.87149 0.89279 1.86330 1.38181 1.96229 1.16986 1.22935 0.92970 0.96728 0.87375 0.92579 1.86087 1.63288 1.45500 1.43131 0.93090 0.89754 0.92998 0.76146 0.75549 0.75610 0.75811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -56.22 12.84 21.45 0.28 -55.95 16 2 C 0.02 1.34 5.40 84.65 0.46 1.80 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.56 -31.72 8.21 25.60 0.21 -31.51 16 8 H 0.07 3.83 7.09 -2.91 -0.02 3.81 16 9 C 0.20 10.87 2.08 29.88 0.06 10.93 16 10 H -0.02 -1.39 7.82 -2.39 -0.02 -1.41 16 11 O -0.37 -20.47 9.33 -133.33 -1.24 -21.71 16 12 C 0.08 3.53 2.56 30.63 0.08 3.60 16 13 H 0.04 1.92 7.82 -2.39 -0.02 1.91 16 14 C 0.10 3.57 6.47 71.98 0.47 4.04 16 15 O -0.59 -24.19 13.63 -144.43 -1.97 -26.16 16 16 C 0.10 3.35 3.01 30.68 0.09 3.45 16 17 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 18 O -0.55 -16.79 12.07 -141.81 -1.71 -18.51 16 19 C 0.09 2.95 3.25 30.71 0.10 3.05 16 20 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 21 O -0.57 -20.72 12.27 -137.95 -1.69 -22.42 16 22 C 0.06 2.52 2.71 30.69 0.08 2.60 16 23 H 0.06 2.41 7.83 -2.39 -0.02 2.39 16 24 O -0.57 -22.10 12.71 -137.95 -1.75 -23.86 16 25 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.05 1.94 7.79 -2.39 -0.02 1.92 16 28 H 0.39 10.80 9.12 -74.06 -0.68 10.13 16 29 H 0.39 7.24 9.08 -74.05 -0.67 6.57 16 30 H 0.39 12.33 8.53 -74.05 -0.63 11.70 16 31 H 0.39 14.15 7.82 -74.05 -0.58 13.57 16 Total: -1.00 -79.65 263.04 -5.88 -85.53 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: -1.36 Total: 38.47 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 1.55 Total: -2.04 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.28 Total: -55.95 kcal Atomic # 8 Polarization: -104.28 SS G_CDS: -8.37 Total: -112.65 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -79.65 -5.88 -85.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253749450.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.064 kcal (2) G-P(sol) polarization free energy of solvation -79.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -273.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds