Wall clock time and date at job start Mon Mar 30 2020 07:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.54277 * 2 1 4 4 C 1.52917 * 109.54194 * 239.81778 * 2 1 3 5 5 C 1.52914 * 110.74890 * 176.97676 * 4 2 1 6 6 H 1.08999 * 109.55401 * 303.29460 * 5 4 2 7 7 C 1.53001 * 109.54477 * 183.01811 * 5 4 2 8 8 O 1.43971 * 109.02396 * 63.15942 * 5 4 2 9 9 P 1.62500 * 118.98877 * 307.32118 * 8 5 4 10 10 O 1.48003 * 110.19595 * 157.78359 * 9 8 5 11 11 O 1.61008 * 110.30169 * 279.62717 * 9 8 5 12 12 C 1.42903 * 123.00033 * 291.33976 * 11 9 8 13 13 C 1.50694 * 109.46896 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00631 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99663 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00051 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99861 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47188 * 90.00117 * 17 15 13 19 19 H 1.48500 * 109.47242 * 210.00225 * 17 15 13 20 20 H 1.48497 * 109.47284 * 330.00539 * 17 15 13 21 21 O 1.43962 * 109.54547 * 120.27726 * 2 1 3 22 22 H 1.08997 * 109.47008 * 180.18435 * 1 2 3 23 23 H 1.09004 * 109.46953 * 300.18074 * 1 2 3 24 24 H 1.09001 * 109.47083 * 60.18345 * 1 2 3 25 25 H 1.08993 * 109.22382 * 297.30367 * 4 2 1 26 26 H 1.09006 * 109.22313 * 56.65561 * 4 2 1 27 27 H 1.09001 * 109.46924 * 60.00810 * 7 5 4 28 28 H 1.09010 * 109.47289 * 180.02562 * 7 5 4 29 29 H 1.08996 * 109.47516 * 300.00244 * 7 5 4 30 30 H 1.08998 * 109.46909 * 300.00534 * 12 11 9 31 31 H 1.08996 * 109.46887 * 59.99666 * 12 11 9 32 32 H 0.96995 * 119.99614 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0415 -0.7245 -1.2457 5 6 3.5685 -0.6758 -1.3120 6 1 3.9017 0.3617 -1.2901 7 6 4.0461 -1.3416 -2.6042 8 8 4.1101 -1.3797 -0.1789 9 15 3.6033 -0.9798 1.3123 10 8 3.8335 -2.1028 2.2485 11 8 4.3702 0.3387 1.8281 12 6 5.7633 0.3545 2.1458 13 6 6.1604 1.7373 2.5944 14 1 5.4227 2.5251 2.6335 15 6 7.4655 1.9964 2.9561 16 7 8.3638 1.0369 2.9090 17 14 7.9577 3.7102 3.5128 18 1 7.7896 3.8200 4.9842 19 1 9.3781 3.9575 3.1570 20 1 7.0965 4.7156 2.8400 21 8 2.0117 -0.6840 1.1716 22 1 -0.3633 -1.0276 0.0033 23 1 -0.3633 0.5167 0.8884 24 1 -0.3633 0.5110 -0.8916 25 1 1.7167 -1.7644 -1.2148 26 1 1.6284 -0.2464 -2.1340 27 1 3.6289 -0.8126 -3.4611 28 1 5.1347 -1.3066 -2.6500 29 1 3.7153 -2.3799 -2.6218 30 1 5.9616 -0.3585 2.9460 31 1 6.3404 0.0796 1.2630 32 1 9.2819 1.2194 3.1631 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254096458.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:29 Heat of formation + Delta-G solvation = -288.571568 kcal Electronic energy + Delta-G solvation = -17027.754549 eV Core-core repulsion = 14063.832215 eV Total energy + Delta-G solvation = -2963.922334 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.085 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.18577 -38.06468 -37.67160 -34.96967 -34.62858 -34.05185 -32.02353 -29.72983 -27.93566 -25.04488 -23.38917 -22.71780 -20.36508 -19.00166 -18.61755 -18.12127 -17.41886 -16.77274 -16.70631 -16.24029 -15.54858 -15.30964 -15.00554 -14.49422 -13.94272 -13.67444 -13.49581 -13.41116 -13.28304 -13.09519 -12.97413 -12.90112 -12.87103 -12.26780 -12.20586 -11.92350 -11.86287 -11.74342 -11.63287 -11.34013 -11.27922 -10.69844 -8.38164 -6.54319 0.29855 1.40035 1.43814 1.55651 2.17333 2.33593 2.90441 2.94956 3.24020 3.38444 3.74272 3.86807 3.96783 4.20002 4.23771 4.55484 4.66023 4.75507 4.79287 4.86263 4.87231 4.99512 5.09296 5.24408 5.30700 5.47364 5.67586 5.85856 6.01519 6.37428 6.63614 7.17398 8.73959 Molecular weight = 250.08amu Principal moments of inertia in cm(-1) A = 0.028868 B = 0.006445 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.713740 B = 4343.737087 C = 4464.455576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.080 3.920 3 H 0.092 0.908 4 C -0.206 4.206 5 C 0.081 3.919 6 H 0.087 0.913 7 C -0.144 4.144 8 O -0.730 6.730 9 P 2.321 2.679 10 O -1.056 7.056 11 O -0.756 6.756 12 C 0.257 3.743 13 C -0.559 4.559 14 H 0.076 0.924 15 C 0.004 3.996 16 N -0.930 5.930 17 Si 0.991 3.009 18 H -0.269 1.269 19 H -0.272 1.272 20 H -0.257 1.257 21 O -0.706 6.706 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.115 0.885 25 H 0.098 0.902 26 H 0.164 0.836 27 H 0.116 0.884 28 H 0.058 0.942 29 H 0.070 0.930 30 H -0.002 1.002 31 H 0.010 0.990 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.222 1.601 -14.470 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.026 3.974 3 H 0.110 0.890 4 C -0.243 4.243 5 C 0.027 3.973 6 H 0.105 0.895 7 C -0.201 4.201 8 O -0.754 6.754 9 P 2.600 2.400 10 O -1.153 7.153 11 O -0.781 6.781 12 C 0.186 3.814 13 C -0.596 4.596 14 H 0.094 0.906 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.813 3.187 18 H -0.194 1.194 19 H -0.197 1.197 20 H -0.181 1.181 21 O -0.732 6.732 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.134 0.866 25 H 0.117 0.883 26 H 0.181 0.819 27 H 0.134 0.866 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.016 0.984 31 H 0.028 0.972 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.075 1.557 -14.342 20.155 hybrid contribution 0.703 0.362 0.576 0.978 sum -13.373 1.918 -13.765 19.287 Atomic orbital electron populations 1.21909 0.89143 1.04219 1.04673 1.23028 1.00208 0.94832 0.79310 0.89046 1.23391 0.94162 1.05278 1.01487 1.22948 0.92867 0.95775 0.85682 0.89549 1.21904 1.02441 1.02121 0.93597 1.89256 1.78683 1.72437 1.34985 0.89492 0.48685 0.50424 0.51367 1.95082 1.89052 1.61782 1.69381 1.87796 1.36008 1.65672 1.88599 1.19771 0.68765 0.98775 0.94129 1.21513 0.95699 0.95517 1.46845 0.90554 1.26120 0.95432 1.03286 0.94649 1.70080 1.03948 1.35117 1.47731 0.85071 0.77816 0.76968 0.78853 1.19436 1.19674 1.18098 1.89235 1.50816 1.80915 1.52228 0.91151 0.91604 0.86628 0.88317 0.81851 0.86587 0.92253 0.91085 0.98421 0.97222 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.58 71.98 0.69 -1.45 16 2 C 0.08 1.76 3.50 30.57 0.11 1.87 16 3 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 4 C -0.21 -3.49 4.61 30.54 0.14 -3.35 16 5 C 0.08 1.94 3.50 30.57 0.11 2.05 16 6 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 7 C -0.14 -2.56 9.57 71.98 0.69 -1.87 16 8 O -0.73 -26.85 10.39 -15.33 -0.16 -27.01 16 9 P 2.32 101.20 6.75 -40.88 -0.28 100.93 16 10 O -1.06 -58.27 18.58 -8.34 -0.15 -58.42 16 11 O -0.76 -37.81 10.17 -14.82 -0.15 -37.96 16 12 C 0.26 14.99 6.20 71.23 0.44 15.43 16 13 C -0.56 -33.12 9.43 25.60 0.24 -32.87 16 14 H 0.08 4.33 7.81 -2.91 -0.02 4.31 16 15 C 0.00 0.24 5.46 84.66 0.46 0.70 16 16 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 17 Si 0.99 43.44 29.54 68.60 2.03 45.47 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 21 O -0.71 -24.27 10.39 -15.32 -0.16 -24.43 16 22 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.16 1.05 8.14 -2.38 -0.02 1.04 16 27 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -81.48 286.11 5.38 -76.10 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: 1.09 Total: 0.81 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 2.88 Total: -19.50 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.28 Total: -55.97 kcal Atomic # 8 Polarization: -147.20 SS G_CDS: -0.62 Total: -147.82 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 15 Polarization: 101.20 SS G_CDS: -0.28 Total: 100.93 kcal Total: -81.48 5.38 -76.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254096458.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.472 kcal (2) G-P(sol) polarization free energy of solvation -81.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -288.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds