Wall clock time and date at job start Mon Mar 30 2020 07:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99850 * 2 1 4 4 H 1.48503 * 109.47367 * 240.00115 * 3 2 1 5 5 H 1.48509 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47095 * 119.99830 * 3 2 1 7 7 C 1.37873 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00156 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99948 * 0.02562 * 7 2 1 10 10 S 1.81006 * 109.47311 * 180.02562 * 9 7 2 11 11 C 1.76194 * 100.00284 * 179.97438 * 10 9 7 12 12 S 1.71206 * 119.99873 * 0.02562 * 11 10 9 13 13 C 1.41356 * 120.00343 * 180.27438 * 11 10 9 14 14 C 1.34554 * 124.77633 * 6.00126 * 13 11 10 15 15 N 1.36927 * 124.77634 * 0.02562 * 14 13 11 16 16 C 1.51115 * 110.43829 * 179.88076 * 14 13 11 17 17 C 1.54527 * 105.00289 * 343.62446 * 16 14 13 18 18 C 1.51114 * 124.78287 * 186.30517 * 13 11 10 19 19 H 0.96995 * 120.00046 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47418 * 60.00366 * 9 7 2 21 21 H 1.09004 * 109.47368 * 299.99882 * 9 7 2 22 22 H 0.97001 * 120.00349 * 39.11522 * 15 14 13 23 23 H 0.97006 * 119.99368 * 219.10529 * 15 14 13 24 24 H 1.09002 * 110.48916 * 224.65397 * 16 14 13 25 25 H 1.09004 * 110.15198 * 102.42229 * 16 14 13 26 26 H 1.09004 * 110.93098 * 267.02997 * 17 16 14 27 27 H 1.08997 * 110.96603 * 143.37106 * 17 16 14 28 28 H 1.09002 * 110.35103 * 315.59296 * 18 13 11 29 29 H 1.09006 * 110.34797 * 77.85678 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 16 2.4274 -3.8749 -0.0014 11 6 1.3074 -5.2350 -0.0021 12 16 -0.3813 -4.9534 -0.0035 13 6 1.8031 -6.5588 0.0038 14 6 3.1010 -6.8918 0.1256 15 7 4.1276 -5.9960 0.2619 16 6 3.2658 -8.3936 0.0945 17 6 1.8506 -8.9567 0.3552 18 6 0.9506 -7.7991 -0.1325 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5563 -0.8920 21 1 0.6241 -2.5575 0.8880 22 1 4.0111 -5.2044 0.8103 23 1 4.9716 -6.1532 -0.1898 24 1 3.9527 -8.7184 0.8759 25 1 3.6258 -8.7117 -0.8840 26 1 1.6973 -9.1483 1.4173 27 1 1.6759 -9.8592 -0.2306 28 1 0.0625 -7.7195 0.4945 29 1 0.6676 -7.9520 -1.1740 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254194554.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:57 Heat of formation + Delta-G solvation = 22.333160 kcal Electronic energy + Delta-G solvation = -12919.917811 eV Core-core repulsion = 10674.474403 eV Total energy + Delta-G solvation = -2245.443407 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 243.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.30736 -34.13502 -33.18041 -31.34849 -28.68393 -27.14281 -25.28952 -23.03910 -21.21772 -18.92061 -17.22567 -16.89594 -16.28330 -16.11521 -15.50453 -14.74087 -13.51436 -13.01992 -12.97917 -12.71996 -12.63091 -12.39883 -11.92987 -11.68964 -11.25173 -11.15832 -10.94380 -10.74820 -10.47959 -10.21164 -9.99215 -9.59501 -9.04517 -8.61206 -7.49196 -7.14752 -6.70191 -6.17473 -4.27602 0.26010 2.08198 2.55137 2.82781 3.24720 3.29290 3.30368 3.38776 3.89277 4.32249 4.40258 4.69027 4.88655 5.17180 5.29477 5.43057 5.53415 5.65925 5.89443 5.92633 6.15561 6.23381 6.51089 7.16785 7.31273 7.33481 7.52700 7.66917 7.94319 8.72958 9.35507 10.91782 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.042231 B = 0.006215 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.861448 B = 4503.911355 C = 5126.725912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.064 0.936 9 C 0.063 3.937 10 S -0.063 6.063 11 C 0.126 3.874 12 S -0.524 6.524 13 C -0.221 4.221 14 C 0.242 3.758 15 N -0.842 5.842 16 C -0.103 4.103 17 C -0.119 4.119 18 C -0.056 4.056 19 H 0.268 0.732 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.409 0.591 23 H 0.403 0.597 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.871 -15.900 0.462 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.134 4.134 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.082 0.918 9 C -0.085 4.085 10 S 0.180 5.820 11 C -0.117 4.117 12 S -0.382 6.382 13 C -0.237 4.237 14 C 0.115 3.885 15 N -0.388 5.388 16 C -0.142 4.142 17 C -0.157 4.157 18 C -0.096 4.096 19 H 0.078 0.922 20 H 0.084 0.916 21 H 0.084 0.916 22 H 0.247 0.753 23 H 0.234 0.766 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.696 -15.384 0.470 18.191 hybrid contribution 0.230 1.062 0.030 1.087 sum 9.926 -14.322 0.501 17.433 Atomic orbital electron populations 1.69993 1.06036 1.27520 1.47668 1.24951 0.94948 0.99090 0.94431 0.86444 0.79444 0.82089 0.78816 1.19926 1.20893 1.19935 1.20596 0.93061 0.88882 1.54803 0.91760 1.21889 0.93840 0.89224 1.03519 1.84971 1.19039 1.01193 1.76768 1.27143 1.02778 0.97813 0.84004 1.92568 0.98752 1.92189 1.54688 1.19660 0.94515 0.93295 1.16196 1.20568 0.88408 0.91895 0.87605 1.42229 1.15021 1.26647 1.54892 1.21546 0.99561 0.89923 1.03187 1.22378 0.93104 0.98233 1.01948 1.20869 0.97685 0.88938 1.02129 0.92233 0.91592 0.91580 0.75279 0.76574 0.89697 0.89153 0.90776 0.90320 0.89924 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.13 13.29 55.43 0.74 -25.39 15 2 C 0.07 2.02 5.46 -17.82 -0.10 1.92 15 3 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 15 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 7 C -0.53 -14.81 9.13 -34.44 -0.31 -15.12 15 8 H 0.06 1.70 7.71 -52.49 -0.40 1.29 15 9 C 0.06 1.68 4.19 36.00 0.15 1.83 15 10 S -0.06 -1.29 18.17 -107.48 -1.95 -3.24 15 11 C 0.13 2.59 6.56 31.92 0.21 2.80 15 12 S -0.52 -12.72 27.43 -107.48 -2.95 -15.67 15 13 C -0.22 -3.48 5.91 -104.54 -0.62 -4.10 15 14 C 0.24 2.88 7.17 -81.42 -0.58 2.30 15 15 N -0.84 -8.96 7.77 33.78 0.26 -8.70 15 16 C -0.10 -0.84 6.79 -26.88 -0.18 -1.02 15 17 C -0.12 -1.05 7.14 -25.13 -0.18 -1.23 15 18 C -0.06 -0.75 6.08 -26.88 -0.16 -0.91 15 19 H 0.27 7.50 8.31 -40.82 -0.34 7.16 15 20 H 0.07 1.94 7.72 -51.92 -0.40 1.54 15 21 H 0.07 1.94 7.72 -51.91 -0.40 1.54 15 22 H 0.41 5.05 6.24 -27.12 -0.17 4.88 15 23 H 0.40 3.00 8.95 -40.82 -0.37 2.63 15 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 15 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 15 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 15 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 15 28 H 0.08 1.24 7.80 -51.93 -0.40 0.83 15 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 LS Contribution 271.10 15.07 4.09 4.09 Total: -1.00 -33.13 271.10 -10.01 -43.14 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -3.39 Total: 3.24 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -1.78 Total: -13.54 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 1.00 Total: -34.09 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -14.01 SS G_CDS: -4.90 Total: -18.91 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.13 -10.01 -43.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254194554.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.473 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds