Wall clock time and date at job start Mon Mar 30 2020 07:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99850 * 2 1 4 4 H 1.48503 * 109.47367 * 240.00115 * 3 2 1 5 5 H 1.48509 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47095 * 119.99830 * 3 2 1 7 7 C 1.37873 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00156 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99948 * 0.02562 * 7 2 1 10 10 S 1.81006 * 109.47311 * 180.02562 * 9 7 2 11 11 C 1.76194 * 100.00284 * 179.97438 * 10 9 7 12 12 S 1.71206 * 119.99873 * 0.02562 * 11 10 9 13 13 C 1.41356 * 120.00343 * 180.27438 * 11 10 9 14 14 C 1.34554 * 124.77633 * 6.00126 * 13 11 10 15 15 N 1.36927 * 124.77634 * 0.02562 * 14 13 11 16 16 C 1.51115 * 110.43829 * 179.88076 * 14 13 11 17 17 C 1.54527 * 105.00289 * 343.62446 * 16 14 13 18 18 C 1.51114 * 124.78287 * 186.30517 * 13 11 10 19 19 H 0.96995 * 120.00046 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47418 * 60.00366 * 9 7 2 21 21 H 1.09004 * 109.47368 * 299.99882 * 9 7 2 22 22 H 0.97001 * 120.00349 * 39.11522 * 15 14 13 23 23 H 0.97006 * 119.99368 * 219.10529 * 15 14 13 24 24 H 1.09002 * 110.48916 * 224.65397 * 16 14 13 25 25 H 1.09004 * 110.15198 * 102.42229 * 16 14 13 26 26 H 1.09004 * 110.93098 * 267.02997 * 17 16 14 27 27 H 1.08997 * 110.96603 * 143.37106 * 17 16 14 28 28 H 1.09002 * 110.35103 * 315.59296 * 18 13 11 29 29 H 1.09006 * 110.34797 * 77.85678 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 16 2.4274 -3.8749 -0.0014 11 6 1.3074 -5.2350 -0.0021 12 16 -0.3813 -4.9534 -0.0035 13 6 1.8031 -6.5588 0.0038 14 6 3.1010 -6.8918 0.1256 15 7 4.1276 -5.9960 0.2619 16 6 3.2658 -8.3936 0.0945 17 6 1.8506 -8.9567 0.3552 18 6 0.9506 -7.7991 -0.1325 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5563 -0.8920 21 1 0.6241 -2.5575 0.8880 22 1 4.0111 -5.2044 0.8103 23 1 4.9716 -6.1532 -0.1898 24 1 3.9527 -8.7184 0.8759 25 1 3.6258 -8.7117 -0.8840 26 1 1.6973 -9.1483 1.4173 27 1 1.6759 -9.8592 -0.2306 28 1 0.0625 -7.7195 0.4945 29 1 0.6676 -7.9520 -1.1740 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254194554.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:57 Heat of formation + Delta-G solvation = -1.211666 kcal Electronic energy + Delta-G solvation = -12920.938791 eV Core-core repulsion = 10674.474403 eV Total energy + Delta-G solvation = -2246.464388 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 243.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.43712 -35.39794 -35.18060 -32.59752 -30.85007 -28.13178 -26.64062 -25.07515 -22.13981 -20.21406 -18.87364 -18.31025 -17.85358 -17.61984 -16.69656 -16.43209 -15.29065 -14.75403 -14.51463 -14.09972 -13.83791 -13.64344 -13.22613 -13.06834 -12.91912 -12.72684 -12.47459 -12.10394 -11.95676 -11.69245 -11.59185 -11.45890 -10.79129 -10.69103 -9.04625 -8.76175 -8.57682 -8.31896 -6.53306 -1.19493 0.40323 1.03931 1.25853 1.38061 1.43090 1.51471 1.65734 2.33990 2.62138 3.00435 3.37872 3.84566 4.17554 4.24925 4.59190 4.73022 4.84902 4.89630 4.91498 4.99527 5.10529 5.22540 5.40287 5.44575 5.49546 5.77239 6.07634 6.53198 6.57288 7.16729 8.79059 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.042231 B = 0.006215 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.861448 B = 4503.911355 C = 5126.725912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.061 3.939 10 S -0.005 6.005 11 C 0.141 3.859 12 S -0.698 6.698 13 C -0.262 4.262 14 C 0.318 3.682 15 N -0.816 5.816 16 C -0.097 4.097 17 C -0.107 4.107 18 C -0.058 4.058 19 H 0.269 0.731 20 H 0.020 0.980 21 H 0.022 0.978 22 H 0.407 0.593 23 H 0.431 0.569 24 H 0.129 0.871 25 H 0.132 0.868 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.051 0.949 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.626 -18.651 0.528 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.590 4.590 8 H 0.098 0.902 9 C -0.087 4.087 10 S 0.241 5.759 11 C -0.103 4.103 12 S -0.554 6.554 13 C -0.282 4.282 14 C 0.183 3.817 15 N -0.359 5.359 16 C -0.135 4.135 17 C -0.145 4.145 18 C -0.099 4.099 19 H 0.078 0.922 20 H 0.038 0.962 21 H 0.040 0.960 22 H 0.244 0.756 23 H 0.267 0.733 24 H 0.147 0.853 25 H 0.150 0.850 26 H 0.100 0.900 27 H 0.128 0.872 28 H 0.070 0.930 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.507 -18.088 0.529 23.831 hybrid contribution -1.065 1.511 0.033 1.849 sum 14.442 -16.577 0.562 21.993 Atomic orbital electron populations 1.70189 1.08377 1.28663 1.48856 1.26135 0.95784 1.03733 0.93464 0.85208 0.78017 0.76291 0.79761 1.18393 1.20745 1.18266 1.21049 0.93778 0.89586 1.54575 0.90184 1.21366 0.94751 0.92970 0.99642 1.84064 1.15153 0.98059 1.78599 1.27175 0.99657 0.99717 0.83760 1.92878 1.04293 1.93115 1.65131 1.20001 0.96893 0.92009 1.19270 1.21469 0.86701 0.94837 0.78651 1.42596 1.15731 1.25686 1.51865 1.21860 1.00001 0.84818 1.06841 1.22415 0.91933 0.97214 1.02906 1.20901 0.97524 0.89852 1.01584 0.92171 0.96191 0.95960 0.75625 0.73289 0.85321 0.84998 0.90008 0.87199 0.93035 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.64 13.29 21.45 0.28 -58.36 15 2 C 0.01 0.61 5.46 84.65 0.46 1.07 15 3 Si 0.99 43.84 29.54 68.60 2.03 45.87 15 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 6 H -0.26 -10.77 7.11 99.48 0.71 -10.07 15 7 C -0.55 -31.74 9.13 25.60 0.23 -31.50 15 8 H 0.08 4.22 7.71 -2.91 -0.02 4.20 15 9 C 0.06 3.56 4.19 71.23 0.30 3.86 15 10 S 0.00 -0.19 18.17 -56.46 -1.03 -1.21 15 11 C 0.14 6.05 6.56 68.59 0.45 6.50 15 12 S -0.70 -38.35 27.43 -56.46 -1.55 -39.90 15 13 C -0.26 -7.83 5.91 -19.81 -0.12 -7.95 15 14 C 0.32 5.70 7.17 41.05 0.29 5.99 15 15 N -0.82 -12.15 7.77 -47.03 -0.37 -12.52 15 16 C -0.10 -0.75 6.79 30.50 0.21 -0.54 15 17 C -0.11 -1.29 7.14 31.63 0.23 -1.06 15 18 C -0.06 -1.48 6.08 30.50 0.19 -1.30 15 19 H 0.27 15.96 8.31 -92.71 -0.77 15.19 15 20 H 0.02 1.31 7.72 -2.39 -0.02 1.29 15 21 H 0.02 1.45 7.72 -2.39 -0.02 1.43 15 22 H 0.41 7.97 6.24 -101.42 -0.63 7.34 15 23 H 0.43 2.94 8.95 -92.70 -0.83 2.11 15 24 H 0.13 0.28 8.14 -2.39 -0.02 0.26 15 25 H 0.13 0.37 8.14 -2.38 -0.02 0.35 15 26 H 0.08 0.94 8.14 -2.38 -0.02 0.92 15 27 H 0.11 0.78 8.14 -2.39 -0.02 0.76 15 28 H 0.05 1.64 7.80 -2.39 -0.02 1.62 15 29 H 0.07 1.79 8.14 -2.38 -0.02 1.77 15 Total: -1.00 -87.05 271.10 1.32 -85.72 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -0.29 Total: 5.34 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 2.24 Total: -24.94 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -0.08 Total: -70.88 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -38.54 SS G_CDS: -2.57 Total: -41.11 kcal Total: -87.05 1.32 -85.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254194554.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.512 kcal (2) G-P(sol) polarization free energy of solvation -87.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds