Wall clock time and date at job start Mon Mar 30 2020 07:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86795 * 119.99987 * 2 1 4 4 H 1.48503 * 109.46927 * 269.99507 * 3 2 1 5 5 H 1.48500 * 109.47201 * 29.99361 * 3 2 1 6 6 H 1.48498 * 109.47423 * 149.99552 * 3 2 1 7 7 C 1.39942 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99898 * 160.68799 * 7 2 1 9 9 C 1.41248 * 119.99758 * 340.96592 * 7 2 1 10 10 C 1.41013 * 120.26910 * 322.67676 * 9 7 2 11 11 F 1.35100 * 120.14500 * 359.97438 * 10 9 7 12 12 C 1.37902 * 119.71350 * 179.74304 * 10 9 7 13 13 C 1.38546 * 120.25245 * 0.53158 * 12 10 9 14 14 C 1.38739 * 120.54981 * 359.71677 * 13 12 10 15 15 Cl 1.73595 * 119.86380 * 180.02562 * 14 13 12 16 16 C 1.37819 * 120.28038 * 0.02562 * 14 13 12 17 17 Br 1.89091 * 120.13527 * 179.97438 * 16 14 13 18 18 H 0.96989 * 120.00072 * 0.02562 * 1 2 3 19 19 H 1.07995 * 119.87477 * 180.22678 * 12 10 9 20 20 H 1.08002 * 119.72566 * 179.69801 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4901 2.0463 -1.4001 5 1 1.4399 2.6527 0.6999 6 1 3.5400 1.4402 0.7001 7 6 2.0083 -1.2119 0.0005 8 1 3.0426 -1.2383 -0.3087 9 6 1.3599 -2.4015 0.4000 10 6 0.4264 -2.3819 1.4567 11 9 0.1472 -1.2237 2.0939 12 6 -0.2038 -3.5490 1.8338 13 6 0.0854 -4.7392 1.1861 14 6 1.0059 -4.7718 0.1486 15 17 1.3543 -6.2727 -0.6510 16 6 1.6449 -3.6176 -0.2500 17 35 2.8992 -3.6669 -1.6641 18 1 -0.4850 0.8399 -0.0004 19 1 -0.9219 -3.5363 2.6403 20 1 -0.4096 -5.6491 1.4917 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258257873.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:33 Heat of formation + Delta-G solvation = -39.351841 kcal Electronic energy + Delta-G solvation = -12101.552152 eV Core-core repulsion = 9477.397765 eV Total energy + Delta-G solvation = -2624.154387 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -47.24858 -37.67945 -35.61221 -33.83869 -31.17897 -29.61832 -28.00581 -25.48358 -21.40245 -21.11284 -17.78478 -16.00394 -15.70195 -15.01847 -14.80924 -14.02667 -13.24830 -12.78107 -12.48661 -12.26510 -11.88484 -11.55414 -11.26065 -11.10199 -10.63140 -10.44852 -10.26497 -9.76195 -9.67396 -9.26061 -8.94047 -7.71687 -7.36980 -7.05653 -4.72160 2.15636 2.35649 2.72834 2.99034 3.00735 3.06413 3.12662 3.81273 4.26646 5.00120 5.67691 5.90514 6.06366 6.51777 6.81911 6.90225 7.05813 7.14795 7.30700 7.68615 8.12538 8.36954 8.51465 9.93431 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.010551 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.345361 B = 2653.191926 C = 3679.709577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.078 3.922 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.444 4.444 8 H 0.098 0.902 9 C 0.111 3.889 10 C 0.051 3.949 11 F -0.135 7.135 12 C -0.116 4.116 13 C -0.207 4.207 14 C 0.021 3.979 15 Cl -0.096 7.096 16 C -0.166 4.166 17 Br -0.071 7.071 18 H 0.289 0.711 19 H 0.116 0.884 20 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.229 -3.751 -0.667 4.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.471 4.471 8 H 0.116 0.884 9 C 0.105 3.895 10 C 0.029 3.971 11 F -0.114 7.114 12 C -0.136 4.136 13 C -0.228 4.228 14 C -0.007 4.007 15 Cl -0.068 7.068 16 C -0.247 4.247 17 Br 0.014 6.986 18 H 0.100 0.900 19 H 0.134 0.866 20 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.499 -3.691 -1.261 4.633 hybrid contribution -0.170 0.819 0.350 0.906 sum 2.329 -2.872 -0.911 3.809 Atomic orbital electron populations 1.69749 1.07943 1.30619 1.30323 1.25893 0.94724 1.01643 0.92166 0.86177 0.80726 0.79857 0.79472 1.19128 1.19818 1.18038 1.19581 0.99295 0.90363 1.37831 0.88369 1.17226 0.90756 0.91719 0.89774 1.17720 1.02899 0.80969 0.95490 1.91361 1.92466 1.47653 1.79876 1.20599 1.00320 0.91776 1.00898 1.19964 1.04520 0.97652 1.00681 1.20399 0.99332 0.84668 0.96335 1.98286 1.94484 1.34046 1.79941 1.21225 1.06929 0.94795 1.01768 1.96340 1.57045 1.98956 1.46244 0.90017 0.86631 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.22 11.12 55.55 0.62 -18.60 14 2 C 0.08 1.90 4.53 -17.33 -0.08 1.82 14 3 Si 0.91 18.26 29.60 -169.99 -5.03 13.23 14 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 14 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 14 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 14 7 C -0.44 -11.15 8.11 -37.80 -0.31 -11.46 14 8 H 0.10 2.40 7.30 -52.49 -0.38 2.01 14 9 C 0.11 2.80 5.39 -106.73 -0.58 2.22 14 10 C 0.05 1.25 6.68 -38.65 -0.26 0.99 14 11 F -0.14 -3.41 14.31 2.25 0.03 -3.38 14 12 C -0.12 -2.49 10.00 -39.59 -0.40 -2.89 14 13 C -0.21 -4.26 9.82 -39.28 -0.39 -4.64 14 14 C 0.02 0.46 6.31 -39.55 -0.25 0.21 14 15 Cl -0.10 -1.80 27.71 -51.86 -1.44 -3.24 14 16 C -0.17 -3.89 6.28 -38.77 -0.24 -4.13 14 17 Br -0.07 -1.48 31.10 -68.01 -2.12 -3.59 14 18 H 0.29 6.62 8.30 -40.82 -0.34 6.28 14 19 H 0.12 2.16 8.06 -52.49 -0.42 1.74 14 20 H 0.12 2.07 8.06 -52.49 -0.42 1.65 14 LS Contribution 224.02 15.07 3.38 3.38 Total: -1.00 -25.44 224.02 -7.42 -32.85 By element: Atomic # 1 Polarization: -2.40 SS G_CDS: -0.36 Total: -2.76 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -2.49 Total: -17.88 kcal Atomic # 7 Polarization: -19.22 SS G_CDS: 0.62 Total: -18.60 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.03 Total: -3.38 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -1.44 Total: -3.24 kcal Atomic # 35 Polarization: -1.48 SS G_CDS: -2.12 Total: -3.59 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -25.44 -7.42 -32.85 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258257873.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.500 kcal (2) G-P(sol) polarization free energy of solvation -25.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds