Wall clock time and date at job start Mon Mar 30 2020 07:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86795 * 119.99987 * 2 1 4 4 H 1.48503 * 109.46927 * 269.99507 * 3 2 1 5 5 H 1.48500 * 109.47201 * 29.99361 * 3 2 1 6 6 H 1.48498 * 109.47423 * 149.99552 * 3 2 1 7 7 C 1.39942 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99898 * 160.68799 * 7 2 1 9 9 C 1.41248 * 119.99758 * 340.96592 * 7 2 1 10 10 C 1.41013 * 120.26910 * 322.67676 * 9 7 2 11 11 F 1.35100 * 120.14500 * 359.97438 * 10 9 7 12 12 C 1.37902 * 119.71350 * 179.74304 * 10 9 7 13 13 C 1.38546 * 120.25245 * 0.53158 * 12 10 9 14 14 C 1.38739 * 120.54981 * 359.71677 * 13 12 10 15 15 Cl 1.73595 * 119.86380 * 180.02562 * 14 13 12 16 16 C 1.37819 * 120.28038 * 0.02562 * 14 13 12 17 17 Br 1.89091 * 120.13527 * 179.97438 * 16 14 13 18 18 H 0.96989 * 120.00072 * 0.02562 * 1 2 3 19 19 H 1.07995 * 119.87477 * 180.22678 * 12 10 9 20 20 H 1.08002 * 119.72566 * 179.69801 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4901 2.0463 -1.4001 5 1 1.4399 2.6527 0.6999 6 1 3.5400 1.4402 0.7001 7 6 2.0083 -1.2119 0.0005 8 1 3.0426 -1.2383 -0.3087 9 6 1.3599 -2.4015 0.4000 10 6 0.4264 -2.3819 1.4567 11 9 0.1472 -1.2237 2.0939 12 6 -0.2038 -3.5490 1.8338 13 6 0.0854 -4.7392 1.1861 14 6 1.0059 -4.7718 0.1486 15 17 1.3543 -6.2727 -0.6510 16 6 1.6449 -3.6176 -0.2500 17 35 2.8992 -3.6669 -1.6641 18 1 -0.4850 0.8399 -0.0004 19 1 -0.9219 -3.5363 2.6403 20 1 -0.4096 -5.6491 1.4917 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258257873.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:33 Heat of formation + Delta-G solvation = -51.443923 kcal Electronic energy + Delta-G solvation = -12102.076504 eV Core-core repulsion = 9477.397765 eV Total energy + Delta-G solvation = -2624.678739 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.10764 -39.40485 -37.23211 -35.59810 -32.91507 -31.38319 -29.73275 -27.27251 -23.16218 -22.86257 -19.57405 -17.77621 -17.45695 -16.79993 -16.47578 -15.85837 -14.92754 -14.46773 -14.20302 -14.02151 -13.58515 -13.24515 -13.00170 -12.71981 -12.22873 -12.05433 -11.91523 -11.46319 -11.37784 -11.00661 -10.63203 -9.47605 -9.12194 -8.81977 -6.56782 0.38779 0.62155 1.01773 1.37595 1.40588 1.44536 1.52404 2.17202 2.51979 3.19847 3.95310 4.24397 4.42570 4.78077 5.05783 5.13889 5.34591 5.45574 5.54501 5.91518 6.28521 6.57955 6.70492 8.19634 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.010551 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.345361 B = 2653.191926 C = 3679.709577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.043 3.957 3 Si 0.975 3.025 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.474 4.474 8 H 0.095 0.905 9 C 0.086 3.914 10 C 0.016 3.984 11 F -0.147 7.147 12 C -0.110 4.110 13 C -0.194 4.194 14 C 0.011 3.989 15 Cl -0.069 7.069 16 C -0.183 4.183 17 Br -0.055 7.055 18 H 0.294 0.706 19 H 0.145 0.855 20 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.213 -4.533 -0.553 5.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.176 4.176 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.502 4.502 8 H 0.113 0.887 9 C 0.080 3.920 10 C -0.006 4.006 11 F -0.126 7.126 12 C -0.129 4.129 13 C -0.215 4.215 14 C -0.018 4.018 15 Cl -0.040 7.040 16 C -0.264 4.264 17 Br 0.030 6.970 18 H 0.104 0.896 19 H 0.163 0.837 20 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.485 -4.495 -1.152 5.264 hybrid contribution -0.183 0.839 0.295 0.908 sum 2.302 -3.656 -0.857 4.405 Atomic orbital electron populations 1.69785 1.09179 1.31559 1.31873 1.26640 0.95325 1.04386 0.91296 0.85275 0.79377 0.76045 0.79756 1.18292 1.19169 1.17960 1.19723 0.99404 0.91356 1.39700 0.88729 1.17562 0.91525 0.92586 0.90302 1.18097 1.04431 0.81644 0.96398 1.91315 1.92678 1.48473 1.80093 1.20961 0.99860 0.90959 1.01142 1.20418 1.03247 0.98522 0.99303 1.20632 0.99082 0.85445 0.96667 1.98292 1.94330 1.31941 1.79448 1.21531 1.07497 0.95073 1.02319 1.96316 1.56443 1.98906 1.45342 0.89572 0.83745 0.83074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.82 11.12 21.83 0.24 -40.58 14 2 C 0.04 2.08 4.53 85.25 0.39 2.46 14 3 Si 0.98 37.50 29.60 68.60 2.03 39.54 14 4 H -0.26 -9.51 7.11 99.48 0.71 -8.80 14 5 H -0.27 -9.89 7.11 99.48 0.71 -9.18 14 6 H -0.26 -9.68 7.11 99.48 0.71 -8.97 14 7 C -0.47 -24.17 8.11 23.42 0.19 -23.98 14 8 H 0.09 4.70 7.30 -2.92 -0.02 4.67 14 9 C 0.09 4.34 5.39 -21.23 -0.11 4.22 14 10 C 0.02 0.77 6.68 22.87 0.15 0.92 14 11 F -0.15 -7.52 14.31 44.97 0.64 -6.87 14 12 C -0.11 -4.51 10.00 22.26 0.22 -4.29 14 13 C -0.19 -7.44 9.82 22.46 0.22 -7.22 14 14 C 0.01 0.44 6.31 22.29 0.14 0.58 14 15 Cl -0.07 -2.41 27.71 -2.72 -0.08 -2.48 14 16 C -0.18 -8.45 6.28 22.80 0.14 -8.30 14 17 Br -0.05 -2.26 31.10 -20.37 -0.63 -2.89 14 18 H 0.29 13.65 8.30 -92.72 -0.77 12.88 14 19 H 0.14 5.00 8.06 -2.91 -0.02 4.97 14 20 H 0.15 4.71 8.06 -2.91 -0.02 4.68 14 Total: -1.00 -53.48 224.02 4.83 -48.64 By element: Atomic # 1 Polarization: -1.03 SS G_CDS: 1.28 Total: 0.25 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 1.34 Total: -35.61 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.24 Total: -40.58 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 0.64 Total: -6.87 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.54 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -0.08 Total: -2.48 kcal Atomic # 35 Polarization: -2.26 SS G_CDS: -0.63 Total: -2.89 kcal Total: -53.48 4.83 -48.64 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258257873.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.801 kcal (2) G-P(sol) polarization free energy of solvation -53.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds