Wall clock time and date at job start Mon Mar 30 2020 07:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48507 * 109.46864 * 89.99908 * 3 2 1 5 5 H 1.48496 * 109.47230 * 210.00044 * 3 2 1 6 6 H 1.48502 * 109.47116 * 330.00321 * 3 2 1 7 7 C 1.39926 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99611 * 17.84358 * 7 2 1 9 9 C 1.41356 * 120.00131 * 197.84389 * 7 2 1 10 10 C 1.40725 * 120.21684 * 28.59081 * 9 7 2 11 11 C 1.37776 * 119.76022 * 179.97438 * 10 9 7 12 12 F 1.35101 * 119.89510 * 179.97438 * 11 10 9 13 13 C 1.38973 * 120.19912 * 359.97438 * 11 10 9 14 14 Br 1.89097 * 119.78027 * 180.02562 * 13 11 10 15 15 C 1.38810 * 120.44181 * 359.97438 * 13 11 10 16 16 Cl 1.73598 * 119.88219 * 179.97438 * 15 13 11 17 17 C 1.37717 * 120.23327 * 359.77585 * 15 13 11 18 18 H 0.96997 * 120.00105 * 175.44942 * 1 2 3 19 19 H 1.08004 * 120.11875 * 359.96148 * 10 9 7 20 20 H 1.08007 * 120.10483 * 180.25685 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0464 1.4002 5 1 3.5399 1.4402 -0.7000 6 1 1.4398 2.6527 -0.7000 7 6 2.0080 -1.2118 0.0005 8 1 1.5069 -2.1247 -0.2857 9 6 3.3706 -1.2411 0.3757 10 6 3.8766 -0.2897 1.2807 11 6 5.2061 -0.3273 1.6403 12 9 5.6949 0.5851 2.5085 13 6 6.0457 -1.3008 1.1125 14 35 7.8683 -1.3419 1.6147 15 6 5.5552 -2.2440 0.2199 16 17 6.6171 -3.4532 -0.4310 17 6 4.2281 -2.2262 -0.1479 18 1 -0.4850 -0.8374 -0.0666 19 1 3.2252 0.4674 1.6918 20 1 3.8477 -2.9636 -0.8393 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258357759.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:26 Heat of formation + Delta-G solvation = -49.042188 kcal Electronic energy + Delta-G solvation = -11921.737207 eV Core-core repulsion = 9297.162615 eV Total energy + Delta-G solvation = -2624.574592 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -48.23366 -38.07753 -35.92044 -34.10430 -31.51286 -29.60565 -29.06849 -24.97681 -22.24748 -20.92184 -18.76580 -16.57704 -15.88915 -15.39860 -15.00231 -14.38133 -13.83971 -13.42886 -12.83632 -12.61731 -12.36403 -11.42290 -11.25106 -10.98282 -10.62914 -10.52691 -10.26180 -10.02840 -9.91357 -9.45296 -9.26231 -8.05511 -7.94187 -7.67475 -5.06872 1.89530 2.00614 2.32964 2.81062 2.99200 3.12929 3.33607 3.72394 3.96116 4.82398 5.08590 5.74132 5.96054 6.18238 6.49852 6.68969 6.83802 7.07359 7.16942 7.31934 7.84772 7.93740 8.21812 9.56253 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.030232 B = 0.008296 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.948190 B = 3374.432293 C = 4118.163499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.042 3.958 3 Si 1.066 2.934 4 H -0.270 1.270 5 H -0.258 1.258 6 H -0.281 1.281 7 C -0.477 4.477 8 H 0.090 0.910 9 C 0.124 3.876 10 C -0.281 4.281 11 C 0.182 3.818 12 F -0.141 7.141 13 C -0.259 4.259 14 Br -0.070 7.070 15 C 0.061 3.939 16 Cl -0.083 7.083 17 C -0.206 4.206 18 H 0.293 0.707 19 H 0.129 0.871 20 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.424 -1.294 0.728 8.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.182 4.182 3 Si 0.891 3.109 4 H -0.196 1.196 5 H -0.182 1.182 6 H -0.208 1.208 7 C -0.503 4.503 8 H 0.108 0.892 9 C 0.119 3.881 10 C -0.302 4.302 11 C 0.161 3.839 12 F -0.119 7.119 13 C -0.340 4.340 14 Br 0.014 6.986 15 C 0.032 3.968 16 Cl -0.055 7.055 17 C -0.227 4.227 18 H 0.105 0.895 19 H 0.147 0.853 20 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.860 0.199 0.922 8.910 hybrid contribution -0.215 -1.788 -0.015 1.801 sum 8.646 -1.589 0.907 8.837 Atomic orbital electron populations 1.70538 1.08058 1.33788 1.27960 1.27501 0.95618 1.04831 0.90202 0.83662 0.75898 0.72772 0.78611 1.19627 1.18190 1.20773 1.20860 0.94306 0.97382 1.37759 0.89219 1.17404 0.93052 0.89291 0.88333 1.21127 0.93397 1.08006 1.07662 1.16889 0.91417 0.86610 0.89015 1.91441 1.88493 1.64781 1.67214 1.20679 0.90755 1.07372 1.15170 1.96424 1.11073 1.98990 1.92154 1.20131 0.90954 0.90277 0.95429 1.98309 1.66491 1.55353 1.85300 1.20966 0.90200 1.05151 1.06395 0.89480 0.85312 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.78 13.66 55.55 0.76 -18.02 14 2 C 0.04 0.99 5.42 -17.34 -0.09 0.89 14 3 Si 1.07 22.12 24.90 -169.99 -4.23 17.89 14 4 H -0.27 -5.40 6.43 56.52 0.36 -5.04 14 5 H -0.26 -5.36 7.03 56.52 0.40 -4.96 14 6 H -0.28 -5.63 7.11 56.52 0.40 -5.23 14 7 C -0.48 -11.32 9.43 -37.76 -0.36 -11.67 14 8 H 0.09 2.14 8.06 -52.48 -0.42 1.72 14 9 C 0.12 2.86 5.14 -106.84 -0.55 2.31 14 10 C -0.28 -6.41 7.25 -38.81 -0.28 -6.69 14 11 C 0.18 4.02 7.25 -39.48 -0.29 3.74 14 12 F -0.14 -2.98 16.71 2.25 0.04 -2.94 14 13 C -0.26 -5.50 6.26 -39.10 -0.24 -5.75 14 14 Br -0.07 -1.30 32.06 -68.01 -2.18 -3.48 14 15 C 0.06 1.26 6.31 -39.56 -0.25 1.01 14 16 Cl -0.08 -1.50 27.71 -51.86 -1.44 -2.93 14 17 C -0.21 -4.45 9.56 -38.84 -0.37 -4.82 14 18 H 0.29 6.74 8.73 -40.82 -0.36 6.38 14 19 H 0.13 2.88 4.37 -52.48 -0.23 2.65 14 20 H 0.12 2.46 8.06 -52.48 -0.42 2.04 14 LS Contribution 221.43 15.07 3.34 3.34 Total: -1.00 -23.14 221.43 -6.42 -29.56 By element: Atomic # 1 Polarization: -2.17 SS G_CDS: -0.27 Total: -2.44 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -2.43 Total: -20.98 kcal Atomic # 7 Polarization: -18.78 SS G_CDS: 0.76 Total: -18.02 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.23 Total: 17.89 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -1.44 Total: -2.93 kcal Atomic # 35 Polarization: -1.30 SS G_CDS: -2.18 Total: -3.48 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -23.14 -6.42 -29.56 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258357759.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.478 kcal (2) G-P(sol) polarization free energy of solvation -23.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds