Wall clock time and date at job start Mon Mar 30 2020 07:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86797 * 119.99979 * 2 1 4 4 H 1.48502 * 109.47351 * 240.00126 * 3 2 1 5 5 H 1.48494 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46942 * 120.00556 * 3 2 1 7 7 C 1.39929 * 119.99603 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99451 * 195.81978 * 7 2 1 9 9 C 1.41298 * 120.00566 * 16.10548 * 7 2 1 10 10 C 1.40770 * 120.22622 * 26.16596 * 9 7 2 11 11 C 1.36536 * 119.93760 * 179.97438 * 10 9 7 12 12 C 1.38791 * 120.42070 * 0.02562 * 11 10 9 13 13 Cl 1.73599 * 119.77234 * 180.02562 * 12 11 10 14 14 C 1.38946 * 120.45867 * 0.02562 * 12 11 10 15 15 F 1.35096 * 119.97323 * 180.02562 * 14 12 11 16 16 C 1.37956 * 120.04412 * 359.73558 * 14 12 11 17 17 Br 1.89110 * 120.20280 * 180.25503 * 16 14 12 18 18 H 0.96999 * 119.99891 * 4.97845 * 1 2 3 19 19 H 1.07999 * 120.02666 * 0.02562 * 10 9 7 20 20 H 1.08004 * 119.78684 * 180.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6964 -1.2125 5 1 1.2775 2.7464 0.0006 6 1 3.0963 1.6963 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0573 -1.2297 0.2544 9 6 1.3431 -2.4114 -0.3405 10 6 0.2117 -2.3818 -1.1775 11 6 -0.4259 -3.5445 -1.5027 12 6 0.0338 -4.7589 -1.0126 13 17 -0.7894 -6.2271 -1.4373 14 6 1.1483 -4.8077 -0.1843 15 9 1.5877 -5.9952 0.2868 16 6 1.8101 -3.6450 0.1524 17 35 3.3317 -3.7070 1.2735 18 1 -0.4850 0.8369 -0.0729 19 1 -0.1511 -1.4403 -1.5627 20 1 -1.2936 -3.5190 -2.1454 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258368849.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:32 Heat of formation + Delta-G solvation = -44.929736 kcal Electronic energy + Delta-G solvation = -11902.599061 eV Core-core repulsion = 9278.202799 eV Total energy + Delta-G solvation = -2624.396263 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.00396 -37.77622 -35.59805 -33.88411 -31.19164 -29.53562 -28.15008 -25.55812 -21.46330 -21.21032 -17.97791 -16.13948 -15.58948 -15.10492 -15.00324 -14.79569 -13.41017 -12.79326 -12.53298 -12.18819 -11.83438 -11.43425 -11.38901 -11.12214 -10.91093 -10.53774 -10.20357 -9.88671 -9.65114 -9.40565 -9.03952 -7.71435 -7.61755 -7.19416 -4.84195 2.23271 2.30607 2.75318 2.89446 2.91181 2.95402 3.29652 3.66739 4.13177 5.07689 5.20076 5.99521 6.29700 6.46230 6.74332 6.81757 7.07745 7.29551 7.46951 7.68065 8.08984 8.32913 8.36615 9.72710 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.020835 B = 0.009740 C = 0.006755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.592718 B = 2873.977990 C = 4144.114665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.075 3.925 3 Si 0.917 3.083 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.424 4.424 8 H 0.098 0.902 9 C 0.147 3.853 10 C -0.151 4.151 11 C -0.063 4.063 12 C -0.190 4.190 13 Cl -0.106 7.106 14 C 0.168 3.832 15 F -0.141 7.141 16 C -0.233 4.233 17 Br -0.076 7.076 18 H 0.291 0.709 19 H 0.135 0.865 20 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 -0.995 -0.363 2.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.451 4.451 8 H 0.116 0.884 9 C 0.141 3.859 10 C -0.171 4.171 11 C -0.082 4.082 12 C -0.219 4.219 13 Cl -0.078 7.078 14 C 0.146 3.854 15 F -0.120 7.120 16 C -0.314 4.314 17 Br 0.009 6.991 18 H 0.102 0.898 19 H 0.153 0.847 20 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.404 -1.018 0.124 2.614 hybrid contribution -0.148 0.373 -0.189 0.444 sum 2.256 -0.645 -0.066 2.347 Atomic orbital electron populations 1.69784 1.07835 1.30943 1.30633 1.26077 0.94879 1.02066 0.91641 0.86181 0.80207 0.78965 0.80682 1.18265 1.19896 1.18285 1.19919 0.98290 0.90359 1.36561 0.88420 1.17295 0.90479 0.90276 0.87802 1.21067 0.98403 0.97039 1.00615 1.20248 0.98879 0.90388 0.98693 1.20025 1.01083 0.87265 1.13523 1.98242 1.79012 1.37425 1.93088 1.16819 0.93317 0.79736 0.95520 1.91422 1.88899 1.44849 1.86825 1.21383 1.02266 0.94758 1.12991 1.96322 1.38003 1.98946 1.65856 0.89758 0.84693 0.86902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.40 10.96 55.55 0.61 -16.79 14 2 C 0.08 1.67 5.16 -17.34 -0.09 1.58 14 3 Si 0.92 16.63 29.59 -169.99 -5.03 11.60 14 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 14 5 H -0.27 -4.83 7.11 56.52 0.40 -4.42 14 6 H -0.26 -4.72 7.11 56.52 0.40 -4.32 14 7 C -0.42 -10.03 8.44 -37.79 -0.32 -10.35 14 8 H 0.10 2.26 6.91 -52.49 -0.36 1.89 14 9 C 0.15 3.56 5.56 -106.80 -0.59 2.96 14 10 C -0.15 -3.48 8.63 -39.24 -0.34 -3.82 14 11 C -0.06 -1.34 9.75 -39.99 -0.39 -1.73 14 12 C -0.19 -4.19 6.35 -39.11 -0.25 -4.44 14 13 Cl -0.11 -2.05 28.60 -51.86 -1.48 -3.54 14 14 C 0.17 3.90 7.24 -39.42 -0.29 3.62 14 15 F -0.14 -3.18 16.29 2.25 0.04 -3.15 14 16 C -0.23 -5.52 6.29 -38.71 -0.24 -5.76 14 17 Br -0.08 -1.60 31.70 -68.01 -2.16 -3.75 14 18 H 0.29 5.92 8.30 -40.82 -0.34 5.59 14 19 H 0.14 3.09 6.21 -52.49 -0.33 2.77 14 20 H 0.11 2.14 8.06 -52.48 -0.42 1.71 14 LS Contribution 225.35 15.07 3.40 3.40 Total: -1.00 -23.84 225.35 -7.38 -31.22 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -0.25 Total: -1.03 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -2.51 Total: -17.95 kcal Atomic # 7 Polarization: -17.40 SS G_CDS: 0.61 Total: -16.79 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.04 Total: -3.15 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.60 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -1.48 Total: -3.54 kcal Atomic # 35 Polarization: -1.60 SS G_CDS: -2.16 Total: -3.75 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -23.84 -7.38 -31.22 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258368849.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.711 kcal (2) G-P(sol) polarization free energy of solvation -23.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds